Studholme, David - University of Exeter - Disciplines of Biosciences

个人简介

2012 Postgraduate Certificate in Academic Practice, University of Exeter 1998 PhD Imperial College, London 1994 MSc (with Distinction), University of East Anglia 1993 BSc (Hons), Southampton University Career 2013-present Associate Professor, University of Exeter 2009-2013 Senior Lecturer, University of Exeter 2004-2009 Head of Bioinformatics, The Sainsbury Laboratory 2002–2004 Computer Biologist, Wellcome Trust Sanger Institute 2000-2002 Postdoctoral Fellow, Southampton University 1997-2000 Postdoctoral Fellow, Imperial College, London

研究领域

Understanding the evolution and emergence of infectious disease. Deploying bioinformatics and computational methods to address biological questions (mostly around infectious disease of plants). Work in our laboratory is mostly computer-based and we collaborate widely with colleagues at Exeter, elsewhere in the UK and worldwide.

近期论文

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Devran Z, Kahveci E, Özkaynak E, Studholme DJ, Tör M (In Press). Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing. Mol Breed, 35(4). Abstract. Author URL. Full text. Article has an altmetric score of 2 Studholme DJ (In Press). Population-genomic insights into emergence, crop-adaptation, and dissemination of Pseudomonas syringae pathogens. Microbial Genomics Full text. Article has an altmetric score of 2 Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK (2016). Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard. Genet Mol Biol, 39(3), 465-473. Abstract. Author URL. Full text. Article has an altmetric score of 3 Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK (2016). Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard. Genet Mol Biol, 0 Abstract. Author URL. Article has an altmetric score of 3 Harrison J, Dornbusch MR, Samac D, Studholme DJ (2016). Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa. Genome Announc, 4(1). Abstract. Author URL. Full text. Article has an altmetric score of 1 Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ (2016). Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome Announc, 4(1). Abstract. Author URL. Full text. Harrison J, Grant MR, Studholme DJ (2016). Draft Genome Sequences of Two Strains of Xanthomonas arboricola pv. celebensis Isolated from Banana Plants. Genome Announc, 4(1). Abstract. Author URL. Full text. Studholme DJ (2016). Genome Update. Let the consumer beware: Streptomyces genome sequence quality. Microbial Biotechnology, 9(1), 3-7. Abstract. Article has an altmetric score of 15 Studholme DJ, McDougal RL, Sambles C, Hansen E, Hardy G, Grant M, Ganley RJ, Williams NM (2016). Genome sequences of six Phytophthora species associated with forests in New Zealand. Genomics Data, 7, 54-56. Abstract. Article has an altmetric score of 2 Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends in Microbiology, 24(1), 35-50. Abstract. Article has an altmetric score of 9 Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends Microbiol, 24(1), 35-50. Abstract. Author URL. Article has an altmetric score of 9 Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G (2015). A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici. Fungal Genet Biol, 79, 125-131. Abstract. Author URL. Article has an altmetric score of 3 Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ (2015). Assessing the performance of the Oxford Nanopore Technologies MinION. Biomolecular Detection and Quantification, 3, 1-8. Abstract. Full text. Article has an altmetric score of 35 Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, et al (2015). Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res, 25(1), 129-141. Abstract. Author URL. Article has an altmetric score of 12 de Torres M, Littlejohn G, Jayaraman S, Studholme D, Bailey TC, Lawson T, Delfino L, Licht D, Truman W, Bölter B, et al (2015). Chloroplasts play a central role in plant defence and are targeted by pathogen effectors. Nature Plants, 1 Full text. Article has an altmetric score of 37 Cairns TC, Sidhu YS, Chaudhari YK, Talbot NJ, Studholme DJ, Haynes K (2015). Construction and high-throughput phenotypic screening ofZymoseptoria tritici over-expression strains. Fungal Genet Biol, 79, 110-117. Abstract. Author URL. Article has an altmetric score of 2 Hodgetts J, Karamura G, Johnson G, Hall J, Perkins K, Beed F, Nakato V, Grant M, Studholme DJ, Boonham N, et al (2015). Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for Xanthomonas campestris pv. musacearum, the causal agent of banana xanthomonas wilt. Plant Pathology, 64(3), 559-567. Abstract.