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Baoyi Zhang, Yuhan Fei, Jiejie Feng, Xueai Zhu, Rui Wang, Hanqing Xiao$, Hongsheng Zhang, Ji Huang. RiceNCexp: A Resource for Rice Non-coding RNA Co-Expression Atlas Based on Massive RNA-seq and Small-RNA seq Data. Journal of Experimental Botany, 2022, in press
Xueai Zhu#, Baoyi Zhang#, Fanqi Gao$, Fang Huang, Hongsheng Zhang and Ji Huang. A Soybean Non-coding RNA Mining and Co-expression Resource Based on 1,596 RNA-seq and Small RNA-seq Libraries. Plant Physiology, 2022, in press
Gao Xiuying, Zhang Ye, Zhang Hongsheng, Huang Ji. A β-ketoacyl-CoA Synthase OsCUT1 Confers Increased Drought Tolerance in Rice. Rice Science,2022, 29(4): 353-362
Gao, Xiuying#; Zhang, Jiaqi#; Li, Jianbo; Wang, Yuji; Z hang, Rong; Du, Huaying; Yin, Jing; Cai, Guang; Wang, Ruqin; Zhang, Baoyi; Zhao, Zhuang$; Zhang, Hongsheng; Huang, Ji. The Phosphoproteomic and Interactomic Landscape of qGL3/OsPPKL1 Mediated Brassinosteroid Signaling in Rice. The Plant Journal,2022,109(5):1048-1063
Gao X, Zhang J, Cai G, Du H, Li J, Wang R, Wang Y, Yin J, Zhang W$, Zhang H, Huang J. qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 protein OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling. Plant Physiology, 2022: 188: 624–636
Jiaqi Zhang#, Xiuying Gao#, Guang Cai, Yuji Wang, Jianbo Li, Huaying Du, Ruqin Wang, Hongsheng Zhang, Ji Huang. An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice. Rice, 2021,14:105
Yuhan Fei, Jiejie Feng, Rui Wang, Baoyi Zhang, Hongsheng Zhang, Ji Huang. PhasiRNAnalyzer: an integrated analyzer for plant phased siRNAs. RNA Biology, 2021, 18(11):1622-1629
Tang, Zhengbin; Gao, Xiuying; Zhan, Xiangyun; Fang, Nengyan; Wang, Ruqing; Zhan, Chengfang; Zhang, Jiaqi; Cai, Guang; Cheng, Jinping ; Bao, Yongmei; Zhang, Hongsheng, Huang Ji. Natural variation in OsGASR7 regulates grain length in rice. Plant Biotechnology Journal, 2021 Jan;19(1):14-16.
Min Duan#, Xiao-Juan Ke#, Hong-Xia Lan, Xi Yuan, Peng Huang, En-Shun Xu, Xiu-Ying Gao, Ru-Qin Wang, Hai-Juan Tang, Hong-Sheng Zhang and Ji Huang. A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.). Plant and Cell Physiology, 2020,61(12):2055-2066 (published Feb, 2021)
Wang, C.# , Yu, H.# , Huang, J.#, Wang, W., Faruquee, M., Zhang, F., Zhao, X., Fu, B., Chen, K., Zhang, H., Tai, S., Wei, C., McNally, K. L., Alexandrov, N., Gao, X., Li, J., Li, Z., Xu, J. and Zheng, T. Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0. Plant Biotechnology Journal, 2020, 18:14-16 (#Co-first author)
Yuhan Fei, Yiyang Mao$, Chengji Shen$, Rui Wang, Hongsheng Zhang, Ji Huang*. WPMIAS: Whole-degradome-based Plant MicroRNA-Target Interaction Analysis Server. Bioinformatics, 2020, 36: 1937-1939.
Rui Wang, Yanhao Cheng, Xiaojuan Ke, Xiaofan Zhang$, Hongsheng Zhang, Ji Huang. Comparative Analysis of Salt Responsive Gene Regulatory Networks in Rice and Arabidopsis. Computational Biology and Chemistry, 2020, 85:107188
Xiuying Gao, Jiaqi Zhang, Xiaojun Zhang, Jun Zhou$, Zhisheng Jiang$, Peng Huang, Zhengbin Tang, Yongmei Bao, Jinping Cheng, Haijuan Tang, Wenhua Zhang, Hongsheng Zhang, and Ji Huang. Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling. The Plant Cell, 2019, 31:1077-1093
Cao WL, Yu Y, Li MY, Luo J, Wang RS, Tang HJ, Huang J, Wang JF, Zhang HS, Bao YM. OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast. Plant Physiol. 2019 Apr;179(4):1330-1342
Rui Wang; Zhongyi Yang; Yuhan Fei; Jiejie Feng; Hui Zhu$; Fang Huang; Hongsheng Zhang; Ji Huang.Construction and analysis of Degradome-Dependent MicroRNA Regulatory Networks in Soybean. BMC Genomics, 2019,20:534
Ji Huang*, Ruqin Wang#, Xinbin Dai, Jiejie Feng, Hongsheng Zhang, Patrick X. Zhao. A microRNA biogenesis-like pathway for producing phased small interfering RNA from a long non-coding RNA in rice. Journal of Experimental Botany, 2019,70(6):1767-1774.
Fei Y, Wang R$, Li H, Liu S$, Zhang H, Huang J. DPMIND: Degradome-based Plant MiRNA-Target Interaction and Network Database, Bioinformatics. 2018, 34:1618-1620.
Yuan X, Huang P, Wang R, Li H, Lv X, Duan M, Tang H, Zhang H, Huang J. A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes. Plant and Cell Physiol. 2018, 59(10): 2129-2142.
Wang X, Zou B, Shao Q, Cui Y, Lu S, Zhang Y, Huang Q, Huang J, Hua J. Natural variation reveals that OsSAP16 controls low-temperature germination in rice. Journal of Experimental Botany, 2018 Jan 23;69(3):413-421.
Zhang Y, Lan H, Shao Q, Wang R, Chen H, Tang H, Zhang H, Huang J. An A 20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.). Journal of Experimental Botany 2016, 67(1):315-326
Fang H, Meng Q, Xu J, Tang H, Tang S, Zhang H, Huang J. Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice. Plant Mol Biol. 2015 87(4-5):441-458.
Zhang X#, Wang J#, Huang J#, Lan H, Wang C, Yin C, Wu Y, Tang H, Qian Q, Li J, Zhang H. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice, Proc Natl Acad Sci USA 2012, 109(52):21534-21539(#Co-first author)
Huang J, Sun S, Xu D, Lan H, Sun H, Wang Z, Bao Y, Wang J, Tang H, Zhang HS. A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.). Plant Mol Biol. 2012,80(3):337-350
Shi XL, Wang JF, Bao YM, Li PF, Xie LJ, Huang J, Zhang HS. Identification and analysis the quantitative trait loci for resistance to leaf blast in Heikezijing with multiple isolates inoculation. Phytopathology 2010, 100: 822-829
Sun SJ, Guo SQ, Yang X, Bao YM, Tang HJ, Sun H, Huang J, Zhang HS. Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Journal of Experimental Botany, 2010, 61(10):2807-2818
Huang J, Sun SJ, Xu DQ, Yang X, Bao YM, Wang ZF, Tang HJ, Zhang HS. Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochemical and Biophysical Research Communications, 2009, 389: 556-561
Liu WY, Wang MM, Huang J, Tang HJ, Lan HX, Zhang HS. The OsDHODH1 gene is involved in salt and drought tolerance in rice. Journal of Integrative Plant Biology，2009, 51(9): 825-833
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