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1. Tao ST, Lin KD, Zhu QQ, Zhang WL* (*通讯). 2020. MH-seq for functionalcharacterization of open chromatin in plants. Trends Plant Sci., 25: 618-619.
2. Zhao HN#, Zhang WL#*（#共同第一，*共同通讯）, Zhang T#, Lin Y, Hu YD,Fang C, Jiang JM*. 2020. Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana, Genome Biol., 21: 24.
3. Zhang PY#, Feng YL#(#共同第一), Wei HY*, Zhang WL* *共同通讯). 2019.R-loop identification and profiling in plants. Trends Plant Sci., 24: 971-972.
4. Li ZJ#, Wang MY#, Lin KD#, Xie YL#(#共同第一), Guo JY, Ye LH, ZhuangYL, Teng W, Ran XJ, Tong YP, Xue YB, Zhang WL* (*共同通讯), ZhangYJ*. 2019. The bread wheat epigenome map revealsdistinct chromatinarchitectural and evolutionary features of functional genetic elements. GenomeBiol., 20: 139.
5. Fang Y#, Chen LF#(#共同第一), Lin KD, Feng YL, Zhang PY, Pan XC,Sanders J, Wu YF, Wang XE, Su Z, Chen CY, Wei HY*, Zhang WL* (*共同通讯). 2019. Characterization of functional relationships of R-loops with genetranscription and epigenetic modification in rice. Genome Res., 29: 1287-1297.
6. Zheng DY#, Wang L#, Chen LY#, Pan XC#(#共同第一), Lin KD, Fang Y,Wang XE, Zhang WL* (通讯). 2019. Salt-response genes are differentiallyregulated at the chromatin levels between seedlings and roots in rice. Plant CellPhysiol., 60: 1790-1803.
7. Chen LF#, Wang XM#, Wang L#（#共同第一）, Fang Y, Pan XC, Gao XQ,Zhang WL* (通讯). 2019. Functional characterization of chloroplast transitpeptide in the small subunit of Rubisco in maize. J. Plant Physiol., 237: 12-20.
8. Zhao HN*, Zhang WL *,¶ (*共同第一;¶共同通讯), Chen LF, Wang L, MarandAP, Wu YF, and Jiang JM*,¶. 2018. Genome-wide mapping of open chromatinrevealed proliferation of regulatory DNA elements derived from transposableelements in maize genome. Plant Physiol 176:2789-2803
9. Pan XC#, Fang Y#(co-first author), Yang XM, Zheng DY, Chen LF,Wang L,Xiao J, Wang XE, Wang K, Cheng, ZK, Yu HX, and Zhang WL (通讯). 2017.Chromatin states responsible for the regulation of differentially expressed genesunder 60Co~γ ray radiation in rice. BMC Genomics 18:778
10. Liu Y#, Zhang WL#(共同第一), Zhang K, Yiu Q, Yan HY, Jiao YN, Jiang JM,Xu WY, Su Z. 2017. Genome-wide mapping of DNase I hypersensitive sitesreveals chromatin accessibility changes in Arabidopsis euchromatin andheterochromatin in regions under extended darkness. Sci Rep 7:4093
11. Zhang K, Xu WY, Wang CC, Yi X, Zhang WL#(#共同通讯), Su Z#. 2017.Differential deposition of H2A.Z in combination with histone modificationswithin related genes in rice callus and seedling. Plant J,89:264-277
12. Fang Y, Wang L, Wang XM, You Q, Pan XC, Xiao J, Wang XE, Wu YF, Su Z#,Zhang WL#(# 共 同 通 讯 ).2016. Histone modifications facilitate thecoexpression of bidirectional promoters in rice. BMC Genomics 17:768
13. Fang Y, Wang XM, Wang L, Pan XC, Xiao J, Wang XE, Wu YF, Zhang WL (通讯 ).2016. Functional characterization of open chromatin in bidirectionalpromoters of rice. Sc Rep 6:32088
14. Zhu B*, Zhang WL*, Zhang T*, Liu B, Jiang JM. 2015. Open Chromatin
Signature-based Enhancer Prediction and Validation in Arabidopsis thaliana.
Plant Cell, 27:2415-2426 (*共同第一)
15. Zhang T*, Zhang WL*, Jiang JM. 2015. Genome-Wide Nucleosome
Occupancy and Positioning and Their Impact on Gene Expression and Genome
Evolution in Plants. Plant Physiol. 168:1406-1416 (*共同第一)
16. Zhang WL, Zhang T, Wu YF, Jiang JM (2014). Open chromatin in plant
genomes. Cytogenetic and Genome Res. 143:18-27.
17. Zhang T*, Talbert PB*, Zhang WL*, Wu YF, Yang ZJ, Henikoff J, Henikoff S,
Jiang JM. 2013. The CentO satellites confers translational and rotational phasing
on cenH3 nucleosomes in rice centromeres. Proc. Natl. Acad. Sci. USA. 110:
E4875-E4883 (*共同第一).
18. Zhang WL, Zhang T, Wu YF, and Jiang JM. 2012. Mapping regulatory DNA
elements and protein-binding footprints using signatures of open chromatin in
Arabidopsis thaliana. Plant Cell, 24:2719-2731.
19. Zhang WL, Wu YF, Schnable JC, Zeng ZX, Freeling M, Crawford GE, and
Jiang JM. 2012. High-resolution mapping of open chromatin in the rice genome.
Genome Res. 22: 151-162.
20. Zhang WL, Friebe B, Gill BS, and Jiang JM. 2010. Centromere inactivation and
epigenetic modifications of a plant chromosome with three functional
centromeres. Chromosoma 119: 553-63.
21. Zhang WL, Wang XE, Yu QY, Ming R, and Jiang JM. 2008. DNA methylation
and heterochromatinization in the male-specific region of the primitive Y
chromosome of papaya. Genome Res. 18: 1938-1943.
22. Zhang WL, Lee H-R, Koo D-K, Jiang JM. 2008. Epigenetic modification of
centromeric chromatin: Hypomethylation of DNA sequences in the
CENH3-associated chromatin in Arabidopsis thaliana and maize. Plant Cell 20:
25-34.
23. Zhang WL, Yi CD, Bao WD, Liu B, Cui JJ, Yu HX, Cao XF, Gu MH, Min Liu,
and Cheng ZK. 2005. The Transcribed 165-bp CentO is the major functional
centromeric element in the wild rice species Oryza punctata. Plant Physiol. 139:
306-315.
书本章节:
1. Zhang AC, Li XX, Zhao HN, Jiang JM, Zhang WL (correspondence author).
(2021). Genome-wide identification of open chromatin in plants using MH-seq.
Methods in Molecular Biology (in press).
2. Zhang WL (correspondence author) and Jiang JM (2018). Application of
MNase-seq in the global mapping of nucleosome positioning in plants. In:
Methods in Molecular Biology: Plant Transcription Factor. 1830:353-366.
3. Zhang WL and Jiang JM (2015). Genome-wide mapping of DNaseI
hypersensitive sites in plants. In: Methods in Molecular Biology: Plant
Functional Genomics.1284:71-89.
4. Zhang WL and Jiang JM (2014) Molecular Cytogenetics of Papaya. In:
Genetics and Genomics of Papaya. Ray M and Moore P (ed.) Springer p157-167,
ISBN: 978-1-4614-8086-0 (Print) 978-1-4614-8087-7
会议报告：
1. Wenli Zhang (报告人) Functional Characterization of non-B DNA Structures in
Plants. National Congress of Crop Science. Oct. 27-30, 2019. Blossom Water
Museum Hotel, Hangzhou, China.
2. Wenli Zhang (报告人) Open chromatin associated with plant genome. National
Congress of Plant Biology. Oct.9-11, 2013. Zhongshan Hotel, Nanjing, China.
3. Wenli Zhang (报告人), Chingman Wai, Qingyi Yu, Ray Ming, and Jiming Jiang.
Cytological characterization of the papaya genome. In: Abstract of Plant
&Animal Genomics XX Conference. Jan. 14-18, 2012. Town & Country
Convention Center, San Diego, CA.USA. P: W310.
4. Wenli Zhang (报告人), Xiue Wang, Qingyi Yu, Ray Ming, and Jiming Jiang.
Epigenetic modifications in the male-specific region of the primitive Y
chromosome of papaya. In: Abstract of Plant &Animal Genomics XVII
Conference. Jan. 10-14, 2009. Town & Country Convention Center, San Diego,
CA.USA. P: W355.
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