Wain, John - University of East Anglia

个人简介

John Wain is Professor of Medical Microbiology at the University of East Anglia, the CSO and director for Discuva and Bactevo Ltd. and founding editor of the Journal of Infection in Developing Countries. He is a bacteriologist and international authority on Salmonella and other gastrointestinal pathogens with over 30 years' experience in the identification of bacterial pathogens and antibiotic resistance. Having started work as a graduate biologist in the public health laboratory service in the UK in 1981, and continued into the NHS from 1989-1992, John Wain pursued a research career in medical microbiology with a Ph.D at Birmingham University a decade at the Wellcome Trust oversees Unit in Vietnam and three years postdoctoral research at Imperial College. This was followed by a faculty position in Cambridge at the Welcome Trust Sanger Institute and a senior lectureship at the University of Liverpool. In 2008 Dr Wain became the head of the largest bacteriology reference laboratory in the UK at Colindale: The laboratory for Gastrointestinal Pathogens, before moving into his current role of leading research in GI infections and developing translational research in diagnostic microbiology at the UEA.

研究领域

My research is centred on the use of new technologies in clinical and public health microbiology; in particular the development of sequence based tools for molecular epidemiology and bacterial identification. I have a long standing interest in Salmonella particularly Salmonella Typhi and in the biological impact of acquired antibiotic resistance. I work within the translational microbiology group at UEA which has an overarching program to improve clinical diagnosis of infectious disease through the development of new techniques for nucleic acid extraction and sequencing. In collaboration with The Earlham Institute we are also pioneering bioinformatic analyses to identify and type pathogens. A major challenge is to predict the antibiotic susceptibility of bacteria and to understand the “normal flora” of sterile sites. I also maintain a keen interest in the use of new technology in countries with developing economies and have research collaborations in India, China, South Africa and Ethiopia. In the past: My research has described the influence of reduced ciprofloxacin resistance on the clinical outcome of typhoid fever patients; linked resistance plasmids and virulence; defined the role of global regulators in the acquisition of resistance plasmids; I initiated the first genome sequencing project for Salmonella; and I pioneered next generation sequencing as a routine method for the molecular epidemiology of gastrointestinal pathogens. My first PhD student developed the Multi Locus Sequence Typing scheme for Salmonella and my most recent developed the transposon insertion method known as TraDIS.

近期论文

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L Barquist, GC Langridge, DJ Turner, MD Phan, AK Turner, A Bateman, J Wain… (2013) A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic acids research 41 (8), 4549-456 Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, Krauland MG, Hale JL, Harbottle H, Uesbeck A, Dougan G, Harrison LH, Brisse S (2012) Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog 8: e1002776 (joint first author - no senior author) Holt KE, Phan MD, Baker S, Duy PT, Nga TV, Nair S, Turner AK, Walsh C, Fanning S, Farrell-Ward S, Dutta S, Kariuki S, Weill FX, Parkhill J, Dougan G, Wain J (2011) Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. PLoS Negl Trop Dis 5: e1245. Beyene G, Nair S, Asrat D, Mengistu Y, Engers H, Wain J (2011) Multidrug resistant Salmonella Concord is a major cause of salmonellosis in children in Ethiopia. J Infect Dev Ctries 5: 23-33. (highly cited for developing country work) Phan MD, Kidgell C, Nair S, Holt KE, Turner AK, Hinds J, Butcher P, Cooke FJ, Thomson NR, Titball R, Bhutta ZA, Hasan R, Dougan G, Wain J (2009) Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever. Antimicrob Agents Chemother 53: 716-727. (one of the two top antibiotic resistance journals) Okeke IN, Wain J (2008) Post-genomic challenges for collaborative research in infectious diseases. Nat Rev Microbiol 6: 858-864. Turner AK, Nair S, Wain J (2006) The acquisition of full fluoroquinolone resistance in Salmonella Typhi by accumulation of point mutations in the topoisomerase targets. J Antimicrob Chemother 58: 733-740. (one of the two top antibiotic resistance journals) Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, Pallen MJ (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol 30: 434-439. Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, Charles I, Maskell DJ, Peters SE, Dougan G, Wain J, Parkhill J, Turner AK (2009) Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res 19: 2308-2316. (very highly cited paper) Doyle M, Fookes M, Ivens A, Mangan MW, Wain J, Dorman CJ (2007) An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science 315: 251-252