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Systems biology

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Rowe, J., Topping, J.F., Liu, J. & Lindsey, K. (2016). Abscisic acid regulates root growth under osmotic stress conditions via an interacting hormonal network with cytokinin, ethylene and auxin. New Phytologist 211(1): 225-239. Liu, J., Whalley, H.J. & Knight, M.R. (2015). Combining modelling and experimental approaches to explain how calcium signatures are decoded by calmodulin-binding transcription activators (CAMTAs) to produce specific gene expression responses. New Phytologist 208(1): 174-187. Moore, S., Zhang, X., Liu, J. & Lindsey, K. (2015). Modelling plant hormone gradients. eLS Moore, S., Zhang, X., Liu, J. & Lindsey, K. (2015). Some fundamental aspects of modelling auxin patterning in the context of auxin-ethylene-cytokinin crosstalk. Plant Signaling and Behavior 10(10): e1056424. Moore, S., Zhang, X., Mudge, A., Rowe, J., Topping, J., Liu, J. & Lindsey, K. (2015). Spatiotemporal modelling of hormonal crosstalk explains the level and patterning of hormones and gene expression in Arabidopsis thaliana wildtype and mutant roots. New Phytologist 207(4): 1110-1122. Liu, J. & Hussey, P.J. (2014). Dissecting the regulation of pollen tube growth by modeling the interplay of hydrodynamics, cell wall and ion dynamics. Frontiers in Plant Science 5: 392. Liu, Junli, Lindsey, Keith & Hussey, Patrick J. (2014). Elucidating the regulation of complex signalling systems in plant cells. Biochemical Society Transactions 42(1): 219-223. Liu, J., Rowe, J. & Lindsey, K. (2014). Hormonal crosstalk for root development: a combined experimental and modeling perspective. Frontiers in Plant Sciences 5: 116. Liu, J.L., Mehdi, S., Topping, J., Friml, J. & Lindsey, K. (2013). Interaction of PLS and PIN and hormonal crosstalk in Arabidopsis root development. Frontiers in Plant Science: Frontiers in Plant Cell Biology 4: 75. Liu, J.L., Knight, H., Hurst, C.H. & Knight, M.R. (2012). Modelling and experimental analysis of the role of interacting cytosolic and vacuolar pools in shaping low temperature calcium signatures in plant cells. Molecular BioSystems 2012(8): 2205-2220. Liu, J.L. & Hussey, P.J. (2011). Towards the creation of a systems tip growth model for a pollen tube. Plant Signaling and Behavior 6(4): 520-522. Liu, J.L., Piette, B.M.A.G., Deeks, M.J., Franklin-Tong, V.E. & Hussey, P.J. (2010). A Compartmental Model Analysis of Integrative and Self-Regulatory Ion Dynamics in Pollen Tube Growth. PLoS One 5(10): e13157. Liu, J., Mehdi, S., Topping, J., Tarkowski, P. & Lindsey, K. (2010). Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. Molecular Systems Biology 6: 373. Liu, Junli, Grieson, Claire S., Webb, Alex A. R. & Hussey, Patrick J. (2010). Modelling dynamic plant cells. CURRENT OPINION IN PLANT BIOLOGY 13(6): 744-749. Liu, J.L., Brazier-Hicks, M. & Edwards, R. (2009). A kinetic model for the metabolism of the herbicide safener fenclorim in Arabidopsis thaliana. Biophysical Chemistry 143(1-2): 85-94. Piette, B.M.A.G., Liu, J., Peeters, K., Smertenko, A., Hawkins, T., Deeks, M., Quinlan, R., Zakrzewski, W.J. & Hussey, P.J. (2009). A Thermodynamic Model of Microtubule Assembly and Disassembly. PLoS ONE 4(8): e6378. Baxter, CJ, Liu, JL, Fernie, AR & Sweetlove, LJ (2007). Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68(16-18): 2313-2319. Baxter, CJ, Redestig, H, Schauer, N, Repsilber, D, Patil, KR, Nielsen, J, Selbig, J, Liu, JL, Fernie, AR & Sweetlove, LJ (2007). The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143(1): 312-325. Liu, JL (2006). Dissipation and maintenance of stable states in an enzymatic system: Analysis and simulation. Biophysical Chemistry 120(3): 207-214. Liu, JL, Crawford, JW & Leontiou, KI (2005). Collapse of single stable states via a fractal attraction basin: analysis of a representative metabolic network. Proceedings Of The Royal Society A: Mathematical Physical and Engineering Sciences 461(2060): 2327-2338.

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