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Cafferty, B.J., Hud, N.V. (2014) Abiotic synthesis of RNA in water: a common goal of prebiotic chemistry and bottom-up synthetic biology. Curr. Opin. Chem. Biol. 22, 146-157.
Cafferty, B.J. Avirah, R.R., Schuster, G.B., Hud, N.V. (2014) Ultra-sensitive pH Control of Supramolecular Polymers and Hydrogels: pKa Matching of Biomimetic Monomers, Chem. Sci. 5, 4681-4686.
Petrov, A.S., et al., Hud, N.V., Williams, L.D., (2014) Evolution of the Ribosome at Atomic Resolution, Proc. Natl. Acad. Sci. USA. 111, 10251-10256.
Chen, M.C., Cafferty, B.J., Mamajanov, I., Gállego, I., Khanam, J., Krishnamurthy, R., Hud, N.V. (2014) Spontaneous prebiotic formation of a beta-ribofuranoside that self-assembles with a complementary heterocycle, J. Am. Chem. Soc. 136, 5640-5646. doi: 10.1021/ja410124v
Portella, G., Germann, M.W., Hud, N.V.,* Orozco, M.* (2014) MD and NMR Analyses of choline and TMA binding to duplex DNA: On the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents, J. Am. Chem. Soc. 136, 3075-3086. doi: 10.1021/ja410698u
Mamajanov, I. et al., (2014) Ester formation and hydrolysis during wet-dry cycles: Generation of far-from-equilibrium polymers in a model prebiotic reaction, Macromolecules 47, 1334-1343. doi: 10.1021/ma402256d
Petrov, A.S., et al. (2014) Secondary Structures of rRNAs from All Three Domains of Life, PLoS ONE 9, e88222. doi: 10.1371/journal.pone.0088222
Petrov, A.S., et al. (2013) Secondary structure and domain architecture of the 23S and 5S rRNAs, Nucleic Acids Res. 41, 7522-7535. doi: 10.1093/nar/gkt513
Hsiao, C., Chou, I.-C., Okafor, C. D., Bowman, J.C., O'Neill, E.B., Athavale, S.S., Petrov, A.S., Hud, N.V., Wartell, R.M., Harvey, S.C., Williams, L.D. (2013) RNA with iron(II) as a cofactor catalyses electron transfer, Nat. Chem. 5, 525-528. doi: 10.1038/nchem.1649
Hud, N.V., Cafferty, B.J., Krishnamurthy, R., Williams, L.D. (2013) The origin of RNA and “My Grandfather’s Axe”, Chem. Biol. 20, 466-474. doi: 10.1016/j.chembiol.2013.03.012
Hsiao, CL et al. (2013) Molecular paleontology: a biochemical model of the ancestral ribosome, Nucleic Acids Res. 41, 3373-3385. doi: 10.1093/nar/gkt023
Cafferty, B.J., Gállego, I., Chen, M.C., Farley, K.I., Eritja, R. and Hud, N.V. (2013) Efficient self-assembly in water of long noncovalent polymers by nucleobase analogs, J. Am. Chem. Soc. 135, 2447-2450. doi:10.1021/ja3121555v
Hsiao, C., H., Lenz, T., Peters, J., Fang, P.-Y., Schneider, D., Anderson, E., Preeprem, T., Bowman, J., O'Neill, E., Athavale, S., Gossett, J., Lie, L., Trippe, C., Murray, J., Petrov, A.S., Wartell, R., Harvey, S.C., Hud, N.V., Williams, L.D., (2013) Molecular paleontology: A biochemical model of the ancestral ribosome, Nucleic Acids Res. 41, 3373-3385. doi:10.1093/nar/gkt023
Parker, T.M., Hohenstein, E.G., Parrish, R.M., Hud, N.V., and Sherrill, C.D. (2013) Quantum mechanical analysis of the energetic contributions to π stacking in nucleic acids versus rise, twist, and slide, J. Am. Chem. Soc. 135, 1306-1316. doi:10.1021/ja3063309
Athavale, S.S., Gossett, J.J., Bowman, J.C., Hud, N.V., Williams, L.D. and Harvey, S.C. (2013) Secondary structure of the free RNA of satellite tobacco mosaic virus, PLoS ONE 8, e54384. doi:10.1371/journal.pone.0054384
Kuruvilla, E., Schuster, G.B., and Hud, N.V. (2013) Enhanced non-enzymatic ligation of homo-purine miniduplexes: Support for greater base stacking in a pre-RNA world, ChemBioChem 14, 45-48. doi:10.1002/cbic.201200601
Athavale, S.S.,,Petrov, A.S., Hsiao, C., Watkins, D., Pricket, C.D., Gossett, J.J., Lie, L., Bowman, J.C., O'Neill, E., Bernier, C.R., Hud, N.V., Wartell, R.M., Harvey, S.C. and Williams, L.D. (2012) RNA folding and catalysis mediated by iron (II), PLoS ONE 7, e38024. doi: 10.1371/pone.0038024
Lannan, F., Mamajanov, I. and Hud, N.V. (2012) Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory, J. Am. Chem. Soc. 134, 15324-15330. doi:10.1021/ja303499m
Petrov, A.S., Bernier, C.R., Hsiao, C., Okafor, C.D., Tannenbaum, E., Stern, J., Gaucher, E., Schneider, D., Hud, N.V., Harvey, S.C. and Williams, L.D. (2012) RNA–magnesium–protein interactions in large ribosomal subunit, J. Phys. Chem. B 116, 8113–8120. doi: 10.1021/jp304723w
Bowan, J.C., Lenz, T.D, Hud, N.V. and Williams, L.D. (2012) Cations in charge: Magnesium ions in RNA folding and catalysis, Curr. Opin. Struc. Biol. 22, 262–272. doi: 10.1016/j.sbi.2012.04.006