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Loman NJ, Quick J, and Simpson JT A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods 2015 Jun 15; (10.1038/nmeth.3444) Quick J, Ashton P, Calus S, Chatt C, Gossain S, Hawker J, Nair S, Neal K, Nye K, Peters T, De Pinna E, Robinson E, Struthers K, Webber M, Catto A, Dallman TJ, Hawkey P, and Loman NJ Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella. Genome Biol 2015 May 30;16(1):114 (10.1186/s13059-015-0677-2) Webber MA, Whitehead RN, Mount M, Loman NJ, Pallen MJ, and Piddock LJParallel evolutionary pathways to antibiotic resistance selected by biocide exposure. J Antimicrob Chemother 2015 May 7; (10.1093/jac/dkv109) Kay GL, Sergeant MJ, Zhou Z, Chan JZ, Millard A, Quick J, Szikossy I, Pap I, Spigelman M, Loman NJ, Achtman M, Donoghue HD, and Pallen MJEighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nat Commun 2015 Apr 7;6:6717 (10.1038/ncomms7717) Loman NJ and Watson M Successful test launch for nanopore sequencing.Nat Methods 2015 Apr;12(4):303-4 (10.1038/nmeth.3327) Mugumbate G, Abrahams KA, Cox JA, Papadatos G, van Westen G, Lelièvre J, Calus ST, Loman NJ, Ballell L, Barros D, Overington JP, and Besra GSMycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation. PLoS One2015;10(3):e0121492 (10.1371/journal.pone.0121492) Gurcha SS, Usha V, Cox JA, Fütterer K, Abrahams KA, Bhatt A, Alderwick LJ, Reynolds RC, Loman NJ, Nataraj V, Alemparte C, Barros D, Lloyd AJ, Ballell L, Hobrath JV, and Besra GS Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target.PLoS One 2014;9(11):e113568 (10.1371/journal.pone.0113568) Salter SJ, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, Turner P, Parkhill J, Loman NJ, and Walker AW Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol 2014 Nov 12;12:87 (10.1186/s12915-014-0087-z) Quick J, Quinlan AR, and Loman NJ A reference bacterial genome dataset generated on the MinION? portable single-molecule nanopore sequencer.Gigascience 2014;3:22 (10.1186/2047-217X-3-22) Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, and Loman NJ Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing. BMJ Open 2014 Nov 4;4(11):e006278 (10.1136/bmjopen-2014-006278) Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, and Quince C Binning metagenomic contigs by coverage and composition. Nat Methods 2014 Nov;11(11):1144-6 (10.1038/nmeth.3103) Fothergill JL, Neill DR, Loman N, Winstanley C, and Kadioglu A Pseudomonas aeruginosa adaptation in the nasopharyngeal reservoir leads to migration and persistence in the lungs. Nat Commun 2014 Sep 2;5:4780 (10.1038/ncomms5780) Loman NJ and Quinlan AR Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 2014 Dec 1;30(23):3399-401 (10.1093/bioinformatics/btu555) Johnson MD, Bell J, Clarke K, Chandler R, Pathak P, Xia Y, Marshall RL, Weinstock GM, Loman NJ, Winn PJ, and Lund PA Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli. Mol Microbiol2014 Sep;93(5):911-27 (10.1111/mmi.12704) Gerasimidis K, Russell R, Hansen R, Quince C, Loman N, Bertz M, Hanske L, Blaut M, McGrogan P, and Edwards CA Role of Faecalibacterium prausnitzii in Crohn's Disease: friend, foe, or does not really matter? Inflamm Bowel Dis2014 Jul;20(7):E18-9 (10.1097/MIB.0000000000000079) Quick J, Constantinidou C, Pallen MJ, Oppenheim B, and Loman NJ Draft Genome Sequence of Elizabethkingia meningoseptica Isolated from a Traumatic Wound. Genome Announc 2014 May 8;2(3) (10.1128/genomeA.00355-14)