Banfield, Jill F. - University of California, Berkeley - Earth and Planetary Sciences Department

个人简介

The University of California, Berkeley: 2001 - Professor, Departments of Earth and Planetary Science and Environmental Science, Policy, Management, 2005 - Professor, Department of Materials Science and Engineering Lawrence Berkeley National Laboratory 2001 - Senior Faculty Scientist, Lawrence Berkeley National Laboratory The University of Wisconsin-Madison: 1990 - 1995 Assistant Professor, Department of Geology and Geophysics 1990 - 2001 Materials Science Program 1995 - 1999 Associate Professor, Department of Geology and Geophysics 1998 - 2001 Affiliate Faculty, Department of Chemistry 1999 - 2001 Professor, Department of Geology and Geophysics The University of Tokyo, Japan: 1996 - 1997 Associate Professor, Mineralogical Institute, Univ. Tokyo 1998 - 1998 Professor, Mineralogical Institute, Univ. Tokyo.

研究领域

Mineralogy, environmental geochemistry, geomicrobiology, and nanogeoscience In my research group we study microbial communities - the organisms present and the ways in which they interact with, and shape their environments. We develop bioinformatics-based methods that allow us to explore the diversity of orgnaisms in Earth's environments using DNA sequencing and other "omics" and geochemical data. Our approach centers around the reconstruction of genomes for the organisms present and analysis of the capacities of these organisms and their impacts on their environments. We also study shale weathering, clay minerals, and microbial processes in riparian zone sediments, soils, and the deeper subsurface.

近期论文

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Voutsinos, M.Y., Banfield, J.F., Moreau, J.W. (2021). Secondary lanthanide phosphate mineralisation in weathering profiles of I-, S-and A-type granites. Mineralogical Magazine. DOI: 10.1180/mgm.2020.90 Meheust, R., Castelle, C.J., Matheus Carnevali, P.B., Farag, I.F., He, C., Chen, L.X., Amano, Y., Hug, L.A., Banfield, J.F. (2020). Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog. ISME Journal. DOI: 10.1038/s41396-020-0716-1 Jaffe, A.L., Castelle, C.J., Matheus Carnevali, P.B., Gribaldo, S., Banfield, J.F. (2020). The rise of diversity in metabolic platforms across the Candidate Phyla Radiation. BMC Biology. DOI: 10.1186/s12915-020-00804-5 Matheus Carnevali, P.B., Lavy, A., Thomas, A.D., Crits-Christoph, A., Diamond, S., Meheust, R., Olm, M.R., Sharrar, A., Lei, S., Dong, W., Falco, N., Bouskill, N., Newcomer, M., Nico, P., Wainwright, H., Dwivedi, D., Williams, K.H., Hubbard, S., Banfield, J.F. (2020). Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale. bioRxiv. DOI: 10.1101/2020.05.14.086363 Pausch, P., Al-Shayeb, B., Bisom-Rapp, E., Tsuchida, C.A., Li, Z., Cress, B.F., Knott, G.J., Jacobsen, S.E., Banfield, J.F., Doudna, J.A. (2020). CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science. DOI: 10.1126/science.abb1400 Harrington, L.B., Ma, E., Chen, J.S., Witte, I.P., Gertz, D., Paez-Espino, D., Al-Shayeb, B., Kyrpides, N.C., Burstein, D., Banfield, J.F., Doudna, J.A.(2020). A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Molecular Cell. DOI: 10.1016/j.molcel.2020.06.022 Sharrar, A.M., Crits-Christoph, A., Meheust, R., Diamond, S., Starr, E.P., Banfield, J.F. (2020). Bacterial Secondary Metabolite Biosynthetic Potential in Soil Varies with Phylum, Depth, and Vegetation Type. mBio. DOI: 10.1128/mBio.00416-20 Mu, A., Thomas, B.C., Banfield, J.F., Moreau, J.W. (2020). Subsurface carbon monoxide oxidation capacity revealed through genome‐resolved metagenomics of a carboxydotroph. Environmental Microbiology Reports. DOI: 10.1111/1758-2229.12868 He, C., Keren, R., Whittaker, M., Farag, I.F., Doudna, J., Cate, J.H.D., Banfield, J.F. (2020). Huge and variable diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems. bioRxiv. DOI: 10.1101/2020.05.14.094862 Meheust, R., Castelle, C.J., Matheus Carnevali, P.B., Jaffe, A.L., Banfield, J.F. (2020). Early acquisition of conserved, lineage-specific proteins currently lacking functional predictions were central to the rise and diversification of archaea. bioRxiv. DOI: 10.1101/2020.07.16.207365 Rubin, B.E., Diamond, S., Cress, B.F., Crits-Christoph, A., He, C., Xu, M., Zhou, Z. Smock, D.C., Tang, K., Owens, T.K., Krishnappa, N., Sachdeva, R., Deutschbauer, A.M., Banfield, J.F., Doudna, J.A. (2020). Targeted Genome Editing of Bacteria Within Microbial Communities. bioRxiv. DOI: 10.1101/2020.07.17.209189 Crits-Christoph, A., Bhattacharya, N., Olm, M.R., Song, Y.S., Banfield, J.F.(2020). Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity. bioRxiv. DOI: 10.1101/2020.06.24.170084 Huddy, R.J., Sachdeva, R., Kadzinga, F., Kantor, R., Harrison, S.T.L., Banfield, J.F.(2020). Thiocyanate and organic carbon inputs drive convergent selection for specific autotrophic Afipia and Thiobacillus strains within complex microbiomes. bioRxiv. DOI: 10.1101/2020.04.29.067207 Al-Shayeb, B., Sachdeva, R., Chen, L.X., Ward, F., Munk, P., Devoto, A., Castelle, C.J., Olm, M.R., Bouma-Gregson, K., Amano, Y., He, C., Meheust, R., Brooks, B., Thomas, A., Lavy, A., Matheus Carnevali, P.B., Sun, C., Goltsman, D.S.A., Borton, M.A., Sharrar, A., Jaffe, A.L., Nelson, T.C., Kantor, R., Keren, R., Lane, K.R., Farag. I.F., Lei, S.F., Finstad, K., Amundson, R., Anantharaman, K., Zhou, J.L., Probst, A.L., Power, M.E., Tringe, S.G., Li. W.J., Wrighton, K., Harrison, S., Morowitz, M., Relman, D.A., Doudna, J.A., Lehours, A.C., Warren, L., Cate, J.H.D., Santini, J.M., Banfield, J.F.(2020). Clades of huge phages from across Earth’s ecosystems. Nature. DOI: 10.1038/s41586-020-2007-4 Olm, M.R., Crits-Christoph, A., Diamond, S., Lavy, A., Matheus Carnevali, P.B., Banfield, J.F.(2020). Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries. mSystems. DOI: 10.1128/mSystems.00731-19 Whittaker, M.L., Comolli, L.R., Gilbert, B., Banfield, J.F.(2020). Layer size polydispersity in hydrated montmorillonite creates multiscale porosity networks. Applied Clay Science. DOI: 10.1016/j.clay.2020.105548 Crits-Christoph, A., Olm, M.R., Diamond, S., Bouma-Gregson, K., P.B., Banfield, J.F.(2020). Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow. ISME Journal. DOI: 10.1038/s41396-020-0655-x West, P.T., Peters, S.L., Olm, M.R., Yu, F.Q.B, Lou, Y.C., Firek, B.A., Baker, R., Johnson, A.D., Morowitz, M.J., Hettich, R.L., Banfield, J.F.(2020). Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics and proteomics. bioRxiv. DOI: 10.1101/2020.03.23.004093 Gionfriddo, C.M., Stott, M.B., Power, J.F., Ogorek, J.M, Krabbenhoft, D.P., Wick, R., Holt, K., Chen, L.X., Thomas, B.C., Banfield, J.F., Moreau, J.W.(2020). Genome-resolved metagenomics and detailed geochemical speciation analyses yield new insights into microbial mercury cycling in geothermal springs. bioRxiv. DOI: 10.1101/2020.02.03.933291 Olm, M.R., Crits-Christoph, A., Diamond, S., Lavy, A., Matheus Carnevali, P.B., Banfield, J.F.(2020). Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries. mSystems. DOI: 10.1128/mSystems.00731-19