近期论文
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1. Wei Li, Cong Shi, Kui Li, Qunjie Zhang, Yan Tong, Yun Zhang, Jun Wang, Lynn Clark, Li-zhi Gao*. 2020. Draft genome of the herbaceous bamboo Raddia distichophylla.G3: Genes|Genomes|Genetics (accepted)
2. Nan, H., Lin, YL., Liu, J., Huang H., Li-zhi Gao*. 2020. Genome-wide analysis of the WRKY transcription factor gene family and their response to salt stress in rubber tree. Tropical Plant Biol.https://doi.org/10.1007/s12042-020-09268-x
3. Zhang D, Li W, Chen ZJ, Wei FG, Liu YL, Li-zhi Gao*. 2020. SMRT- and Illumina-based RNA-seq analyses unveil the ginsinoside biosynthesis and transcriptomic complexity in Panax notoginseng.Sci Rep. 2020 Sep 17;10(1):15310. doi: 10.1038/s41598-020-72291-1
4. Wei Li, Fen Zhang, Li-zhi Gao*. 2020. SMRT-based mitochondrial genome of the edible mushroom Morchella conica.Mitochondrial DNA Part B 5(3):3219-3220
5. Li-Ying Feng, Jin Liu, Cheng-Wen Gao, Hai-Bo Wu, Guo-Hua Li and Li-Zhi Gao. Higher genomic variation in wild than cultivated rubber trees, Hevea brasiliensis, revealed by comparative analyses of chloroplast genomes. Front. Ecol. Evol.| https://doi.org/10.3389/fevo.2020.00237
6. Wei Li, Qun-jie Zhang, Ting Zhu, Yan Tong, Kui Li, Cong Shi, Yun Zhang, Yun-long Liu, Jian-jun Jiang, Yuan Liu, En-hua Xia, Hui Huang, Li-ping Zhang, Dan Zhang, Chao Shi, Wen-kai Jiang, You-jie Zhao, Shu-yan Mao, Jun-ying Jiao, Ping-zhen Xu, Li-li Yang, Li-zhi Gao*.2020. Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating-system evolution. Plant Direct.DOI: 10.1002/pld3.232
7. Cong Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, Yan Tong, Kui Li, Yun-Long Liu, Li-zhi Gao*. 2020. The draft genome sequence of an upland wild rice species, Oryza granulata. Scientific Data, 7:131
8. Yan Tong, Li-zhi Gao*. 2020. Development and characterization of EST-SSR markers for Camellia reticulata: Camellia reticulata microsatellitesApplications in Plant Sciences 8(4): e11348
9. Wei Li, Kui Li, Ying Huang, Cong Shi, Wu-Shu Hu, Yun Zhang, Qun-Jie Zhang, En-Hua Xia, Ge-Ran Hutang, Xun-Ge Zhu, Yun-Long Liu, Yuan Liu, Yan Tong, Ting Zhu, Hui Huang, Dan Zhang, Yuan Zhao, Wen-Kai Jiang, Jie Yuan, Yong-Chao Niu, Cheng-Wen Gao, Li-zhi Gao*. 2020. SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation. Communications Biology, 3:167
10. Qun-Jie Zhang, Wei Li, Kui Li, Hong Nan, Cong Shi, Yun Zhang, Zhang-Yan Dai, Yang-Lei Lin, Xiao-Lan Yang, Yan Tong, Dan Zhang, Cui Lu, Li-Ying Feng, ChenFeng Wang, Xiao-Xin Liu, Jian-An Huang, Wen-Kai Jiang, Xing-Hua Wang, XingCai Zhang, Evan E. Eichler, Zhong-Hua Liu, Li-zhi Gao*. 2020. The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons to Drive Genome Size Evolution. Molecular Plant. DOI: 10.1016/j.molp.2020.04.009（首次发表的达到染色体水平的小叶茶茶树基因组，发表后被国内外几乎所有重要媒体报道）
11. Hong Nan, Wei L, Yang-lei Lin, Li-zhi Gao*. 2020. Genome-Wide Analysis of WRKY Genes and Their Response to Salt Stress in the Wild Progenitor of Asian Cultivated Rice, Oryza rufipogon. Frontiers in Genetics, 11:359
12. Jin Liu, Cong Shi, Cheng-Cheng Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, Kui Li, Hui-Fang Lu, Chao Shi, Si-Tao Zhu, Zai-Yun Xiao, Hong Nan, Yao Yue, Xun-Ge Zhu, Yu Wu, Xiao-Ning Hong, Guang-Yi Fan, Yan Tong, Dan Zhang, Chang-Li Mao, Yun-Long Liu, Shi-Jie Hao, Wei-Qing Liu, Mei-Qi Lv, Hai-Bin Zhang, Yuan Liu, Ge-Ran Hu-tang, Jin-Peng Wang, Jia-Hao Wang, Ying-Huai Sun, Shu-Bang Ni, Wen-Bin Chen, Xing-Cai Zhang, Yuan-Nian Jiao, Evan E. Eichler, Guo-Hua Li, Xin Liu, Li-Zhi Gao*. 2020. The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis. Molecular Plant, 13(2): 336-350（首次发表的达到染色体水平的橡胶树基因组，发表后被国内外几乎所有重要媒体报道）
13. Wei Li, Kui Li, Qun-jie Zhang, Ting Zhu, Yun Zhang, Cong Shi, Yun-long Liu, En-hua Xia, Jian-jun Jiang, Chao Shi, Li-ping Zhang, Hui Huang, Yan Tong, Yuan Liu, Dan Zhang, Yuan Zhao, Wen-kai Jiang, You-jie Zhao, Shu-yan Mao, Jun-ying Jiao, Ping-zhen Xu, Li-li Yang, Guo-ying Yin, Li-zhi Gao. 2020. Improved hybrid denovo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads. ThePlant Genome, e20001
14. Fen Zhang, Wei Li, Cheng-wen Gao, Dan Zhang, Li-zhi Gao*. 2019.. Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica. Scientific Data, 6:209
15. Li-Zhi Gao*, Yun-Long Liu, Dan Zhang, Wei Li, Ju Gao, Yuan Liu, Kui Li, Chao Shi, Yuan Zhao, You-Jie Zhao, Jun-Ying Jiao, Shu-Yan Mao, Cheng-Wen Gao, Evan E. Eichler. 2019. Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats. Communications Biology, 3:278
16. Hong Nan, Gao L. Z. *.2019. Genome-wide analysis of WRKY genes and their response to hormone and mechanic stresses in carrot. Frontiers in Genetics 10:363. doi: 10.3389/fgene.2019.00363
17. You-jun Huang, …,Gao L. Z. , Jian-qin Huang.2019. The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition.GigaScience 8(5)
18. Zhong-hua Liu, Gao L. Z., Zong-mao Chen, Xiao-xiong Zeng, Jian-an Huang, Yu-shun Gong, Qin Li, Shuo-qian Liu, Yong Lin, Shu-xian C ai, Sheng Zhang, Li-gui Xiong, Wei Li, Li Zhou, Xinru Wang, Feng-jian Luo, Qun-jie Zhang, Dan Zhang. 2019. Leading progress on genomics, health benefits and utilization of tea resources in China. Nature 556(7742). https://www.nature.com/articles/d42473-019-00032-8（与刘仲华院士和陈宗懋院士共同在Nature上组织了茶叶专刊，受到国内外的高度关注）
19. Hui Huang, Qiuyang Yao, Enhua Xia, and Gao L. Z.*. 2018. Metabolomics and transcriptomics analyses reveal nitrogen influences on the accumulation of flavonoids and amino acids in young shoots of tea plant (Camellia sinensis L.) associated with tea flavor.J. Agric. Food Chem.66, 9828−9838
20. Junki Lee, Nomar Espinosa Waminal, Hong-Il Choi, Sampath Perumal, Sang-Choon Lee, Van Binh Nguyen, Woojong Jang, Nam-Hoon Kim, Gao L. Z., and Tae-Jin Yang. 2017. Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax. Scientific Reports 7(1). DOI: 10.1038/s41598-017-08194-5
21. Hui Huang, En-Hua Xia, Hai-Bin Zhang, Qiu-Yang Yao, Gao L. Z.*. 2017. De novotranscriptome sequencing of Camellia sasanqua and the analysis of major candidate genes related to floral traits. Plant Physiology and Biochemistry120: 103-111
22. Xi Du, Qi Zhao, En-Hua Xia, Gao L. Z., Franck Richard, Zhu L. Yang. 2017. Mixed-reproductive strategies, competitive mating-type distribution and life cycle of fourteen black morel species. Scientific Reports 7: 1493 DOI:10.1038/s41598-017-01682-8
23. Jia-huan Xu, Hai-bo Wu, Gao L. Z.*. 2017. The complete chloroplast genome sequence of the threatened trident maple Acer buergerianum (Aceraceae). Mitochondrial DNA Part B 2:1, 273-274, DOI: 10.1080/23802359.2017.1325345
24. Qun-Jie Zhang，Gao L. Z.*. 2017. Rapid and recent evolution of LTR retrotransposons drives rice genome evolution during the speciation of AA- genome Oryza species.G3-Genes Genomes Geneticshttps://doi.org/10.1534/g3.116.037572（作为一个新的“研究亮点”，Genetics杂志对该工作进行了点评）
25. Wei Li, Yuan Liu, Gao L. Z.*. 2017. The complete chloroplast genome of the endangered wild Musa itinerans (Zingiberales: Musaceae). Conservation Genetics ResourcesDOI: 10.1007/s12686-017-0737-x
26. Ge-Ran Hutang, Gao L. Z.*. 2017. The complete chloroplast genome sequence of Leersia perrieri of the rice tribe Oryzeae (Poaceae). Conservation Genetics Resources DOI: 10.1007/s12686-017-0729-x
27. En-Hua Xia, Hai-Bin Zhang, Jun Sheng, Kui Li, Qun-Jie Zhang, Changhoon Kim, Yun Zhang, Yuan Liu, Ting Zhu, Wei Li, Hui Huang, Yan Tong, Hong Nan, Cong Shi, Chao Shi, Jian-Jun Jiang, Shu-Yan Mao, Jun-Ying Jiao, Dan Zhang, Yuan Zhao, You-Jie Zhao, Li-Ping Zhang, Ben-Ying Liu, Yue Yu, Sheng-Fu Shao, De-Jiang Ni, Evan E. Eichler, Gao L. Z.*. 2017.The tea tree genome provides insights into tea flavor and independent evolution of caffeine biosynthesis. Molecular Plant (http://dx.doi.org/10.1016/j.molp.2017.04.002)（作为国际上首次破译的茶树基因组，发表后被CCTV（新闻联播）、CNN、BBC、华盛顿邮报等几乎所有国内外重要的新闻媒体报刊的采访、报道或转载；该论文被中国科学技术协会遴选为“优秀期刊论文”；是ESI高被引论文）
28. En-Hua Xia, Da-Rong Yang, Jian-Jun Jiang, Qun-Jie Zhang, Yuan Liu, Yun-Long Liu, Yun Zhang, Hai-Bin Zhang, Cong Shi, Yan Tong, Changhoon Kim, Hua Chen, Yan-Qiong Peng, Yue Yu, Wei Zhang, Evan E. Eichler, Gao L. Z.*. 2017.The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity. Scientific Reports 7(1): 1806. doi: 10.1038/s41598-017-01869-z.
29. Dan Zhang, Wei Li, En-hua Xia, Qun-jie Zhang, Yuan Liu, Yun Zhang, Yan Tong, Yuan Zhao, Yong-chao Niu, Jia-huan Xu, Gao L. Z.*. 2017. The medicinal herb Panax notoginseng genome provides insights into ginsenoside biosynthesis and genome evolution. Molecular Plant 10: 903–907（首次发表的人参属三七基因组，发表后被国内外几乎所有重要媒体报道）
30. Fan-chun Zeng, You-Jie Zhao, Que-jie Zhang,Gao L. Z.*. 2017. LTRtype, an efficient tool to predict structurally complex LTR retrotransposon elements and nested insertions. Frontiers in Plant Science 8:402. doi: 10.3389/fpls.2017.00402
31. T Mornkham, PP Wangsomnuk, XC Mo, FO Francisco, Gao L. Z., H Kurzweil. 2016. Development and characterization of novel EST-SSR markers and their application for genetic diversity analysis of Jerusalem artichoke (Helianthus tuberosus L.). Genetics and Molecular Research: GMR doi: 10.4238/gmr15048857
32. Huang J, Zhang C, Zhao X, Fei Z, Wan K, Zhang Xiaoming Pang, Yin X, Bai Y, Sun X, Gao L. Z., Li R, Zhang J, Li X. 2016. The jujube genome provides insights into genome evolution and the domestication of sweetness/acidity taste in fruit trees. PLoS Genetics 12(12): e1006433. doi:10.1371/journal.pgen.1006433
33. Qing-Xia Ding, Jia Liu , Gao L. Z.*. 2016. The complete chloroplast genome of eggplant (Solanum melongena L.). Mitochondrial DNA Part B 1:1, 843-844, DOI:10.1080/23802359.2016.1186510
34. Cheng-wen Gao, Gao L. Z.*. 2016. The complete chloroplast genome sequence of semi-wild soybean, Glycine gracilis (Fabales: Fabaceae). Conservation Genetics Resources (DOI: 10.1007/s12686-016-0683-z)
35. Cheng-wen Gao, Gao L. Z.*. 2016. The complete chloroplast genome sequence of wild soybean, Glycine soja (Fabales: Fabaceae). Conservation Genetics Resources (DOI 10.1007/s12686-016-0659-z)
36. Dan Zhang, Yuan Liu, Gao L. Z.*. 2016. The complete chloroplast genome sequence of Phyllostachys heterocycla, a fast-growing non-timber bamboo (Poaceae: Bambusoideae). Conservation Genetics Resources (DOI: 10.1007/s12686-016-0654-4)
37. Shuo Wang, Gao L. Z.*. 2016. Complete chloroplast genome sequence and annotation of the tropical japonica group of Asian cultivated rice (Oryza sativa L.). Genome Announcement18;4(1). pii: e01703-15. doi: 10.1128/genomeA.01703-15
38. Gao L. Z.*, Dan Zhang, Kui Li, Ju Gao. 2016. The complete plastid genome sequence of the wild-rice Zizania latifolia and comparative chloroplast genomics of the tribe Oryzeae. Frontiers in Ecology and Evolution4:88.doi: 10.3389/fevo.2016.00088
39. Chao Shi, Shuo Wang, En-Hua Xia, Jian-Jun Jiang, Fan-Chun Zeng, Qiu-Yang Yao, and Gao L. Z.*. 2016. Full transcription of the photosynthetic eukaryote chloroplast genome. Scientific Reports 6 doi:10.1038/srep30135（2016-08-05的【CCTV13】（朝闻天下）以“中科院发现叶绿体基因全转录新机制”为题对该研究成果做了采访报道；发表后被国内外其它重要媒体报道）
40. Gao L. Z.*, Cheng-wen Gao. 2016. Lowered diversity and increased inbreeding depression within peripheralpopulations of an endangered wild rice Oryza rufipogon. PLoS ONE11(3): e0150468. doi: 10.1371/journal.pone.0150468
41. Qiu-Yang Yao, Hui Huang, Yan Tong, Gao L. Z.*. 2016. Transcriptome sequencing reveals gene expression profiles of flavonoid and fatty acid biosynthesis pathways and the development of EST-SSR markers in Camellia reticulata (Theaceae). Frontiers in Plant Science doi: 10.3389/fpls.2016.00163
42. En-Hua Xia*, Qiu-Yang Yao*, Hai-Bin Zhang, Jian-Jun Jiang, Li-Ping Zhang, Gao L. Z.*. 2016.CandiSSR: an efficient pipeline used for identifying candidate polymorphic SSRs based on multiple assembled sequences. Frontiers in Plant Science 6:1171. doi: 10.3389/fpls.2015.01171
43. Wang S, Shi C, Zhang YJ, Hu GX, Gao L. Z.*. 2016. Trading away ancient amber's secrets. Science 351(6276):926. doi: 10.1126/science.351.6276.926-a. （发表后被国内外几乎所有重要媒体报道）
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