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1. Lu Z., Marand A.P., Ricci W.A., Ethridge C.L., Zhang X., and Schmitz R.J. (2019). The prevalence, evolution and chromatin signatures of plant regulatory elements. Nat Plants 5:1250-1259
2. Ricci W.A.*, Lu Z.*, Ji L.*, Marand A.P., Ethridge C.L., Murphy N.G., Noshay J.M., Galli M., Mejia-Guerra M.K., Colome-Tatche M., Johannes F., Rowley M.J., Corces V.G., Zhai J., Scanlon M.J., Buckler E.S, Gallavotti A., Springer N.M., Schmitz R.J., and Zhang X. (2019). Widespread Long-range Cis-Regulatory Elements in the Maize Genome. Nat Plants 5:1237-1249
3. Shao G.*, Lu Z.*, Xiong J., Wang B., Jing Y., Meng X., Liu G., Ma H., Liang Y., Chen F., Wang Y., Li J., and Yu H. (2019). Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice. Mol Plant12:1090-1102
4. Lu Z., Ricci W.A., Schmitz R.J., and Zhang X. (2018). Identification of cis-regulatory elements by chromatin structure. Curr Opin Plant Biol 42:90-94.
5. Lu Z., Hofmeister B.T., Vollmers C., DuBois R.M., and Schmitz R.J. (2017). Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes. Nucleic Acids Res 45:e41.
6. Song X.*, Lu Z.*, Yu H.*, Shao G., Xiong J., Meng X., Jing Y., Liu G., Xiong G., Duan J., Yao X., Liu C., Li H., Wang Y., and Li J. (2017). IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice. Cell Res 27:1128-1141.
7. Lu Z.*, Shao G.*, Xiong J., Jiao Y., Wang J., Liu G., Meng X., Liang Y., Xiong G., Wang Y., and Li J. (2015). MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation. J Genet Genomics (cover story) 42:71-78.
8. Lu Z.*, Yu H.*, Xiong G.*, Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., and Li J. (2013). Genome-wide binding analysis of the transcription activator IDEAL PLANT ARCHITECTURE1 reveals a complex network regulating rice plant architecture. Plant Cell 25:3743-3759.
9. Grover C., Pan M., Yuan D., Arick M., Hu G., Brase L., Stelly D., Lu Z., Schmitz R., Peterson D., Wendel J., and Udall J. (2020). The Gossypium longicalyx genome as a resource for cotton breeding and evolution G3: Genes, Genomes, Genetics 10, 3.
10. Noshay J., Anderson S., Zhou P., Ji L., Ricci W., Lu Z., Stitzer M., Crisp P., Hirsch C., Zhang X., Schmitz R., and Springer N. (2019). Monitoring the interplay between transposable element families and DNA methylation in maize. PLoS Genet 15(9): e1008291.
11. Galli M., Khakhar A., Lu Z., Chen Z., Sen S., Joshi T., Nemhauser J.L., Schmitz R.J., and Gallavotti A. (2018). The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526.
12. Wang J.*, Yu H.*, Xiong G.*, Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., and Li J. (2017). Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice. Plant Cell 29:697-707.
13. Bewick A.J.*, Ji L.*, Niederhuth C.E., Willing E.M., Hofmeister B.T., Shi X., Wang L., Lu Z., Rohr N.A., Hartwig B., Kiefer C., Deal R.B., Schmutz J., Grimwood J., Stroud H., Jacobsen S.E., Schneeberger K., Zhang X., and Schmitz R.J. (2016). On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci USA 113:9111-9116.
14. Wang L.*, Wang B.*, Jiang L., Liu X., Li X., Lu Z., Meng X., Wang Y., Smith S.M., and Li J. (2015). Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Plant Cell 27:3128-3142.
15. Li J.*, Yuan Y.*, Lu Z., Yang L., Gao R., Lu J., Li J., and Xiong G. (2012). Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice. Rice 5:32.
16. Jiao Y.*, Wang Y.*, Xue D.*, Wang J., Yan M., Liu G., Dong G., Zeng D., Lu Z., Zhu X., Qian Q., and Li J. (2010). Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet 42:541-544.