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1. Zhikun Ma, Linda Perry, Quan Li, Xiaoyan Yang*. 2019. Morphological changes in starch grains after dehusking and grinding with stone tools. Scientific Reports 9, 2355.
2. Yongchao Ma, Xiaoyan Yang*, Xiujia Huan, et al. 2018. Multiple indicators of rice remains and the process of rice domestication: a case study in the lower Yangtze River region, China. PLoS One 13, e0208104.
3. Xiaoyan Yang*, Qiuhe Chen, Yongchao Ma, Zhao Li, Qianglu Zhang et al., 2018. New radiocarbon and archaeobotanical evidence outline the timing and route of southward dispersal of rice farming in south China. Science Bulletin 63, 1495-1501.
4. Xiaoyan Yang, Wenxiang Wu, Linda Perry et al. 2018. Critical role of climate change in plant selection and millet domestication in North China. Scientific Reports 8, e7855.
5. Xiaoyan Yang*, Weiwei Wang, Yijie Zhuang et al. 2017. New radiocarbon evidence on early rice consumption and farming in South China. Holocene 27, 1045-1051.
6. Xinxin Zuo, houyuan Lu, Leping Jiang, Jianping Zhang, Xiaoyan Yang, Xiujia Huan, Keyang He, Can Wang, Naiqin Wu. 2017. Dating rice remains through phytolith carbon-14 study reveals domestication at the beginning of the Holocene. Proceedings of the National Academy of Sciences of the United State of America 114, 6486-6491
7. Naimeng Zhang, Guanghui Dong, Xiaoyan Yang* et al., 2017. Diet reconstructed from an analysis of plant microfossils in human dental calculus from the Bronze Age site of Shilinggang, southwestern China. Journal of Archaeological Science 81, 43-48.
8. Zhikun Ma, Chi Zhang, Quan Li, Linda Perry, Xiaoyan Yang*. 2017. Understanding the possible contamination of ancient starch residues by adjacent sediments and modern plants in northern China. Sustainability 9, 752.
9. Yongchao Ma, Xiaoyan Yang*, Xiujia Huan et al. 2016. Rice bulliform phytoliths reveal the process of rice domestication in the Neolithic Lower Yangtze River region. Quaternary International 426, 126-132
10. Zhikun Ma, Xiaoyan Yang*, Chi Zhang, Yonggang Sun, Xin Jia. 2016. Early millet use in West Liaohe area during early–middle Holocene. Science China Earth Sciences 59, 1554-1561
11. Houyuan Lu, Jianping Zhang, Yimin Yang, Xiaoyan Yang, Baiqing Xu, et al. 2016. Earliest tea as evidence for one branch of the Silk Road across the Tibetan Plateau. Scientific Reports 6, 18955.
12. Xiaoyan Yang*, Dorian Fuller, Xiujia Huan et al. 2015. Barnyard grasses were processed with rice around 10000 years ago. Scientific Reports 5, 16251.
13. Xiaoyan Yang*, Zhikun Ma, Jun Li et al. 2015. Comparing subsistence strategies in different landscapes of North China 10,000 years ago. The Holocene 25, 1957-1964.
14. Xiaoyan Yang*, Zhikun Ma, Tao Wang, Linda Perry, Quan Li, Xiujia Huan, Jincheng Yu. 2014. Starch grain evidence reveals early pottery function cooking plant foods in North China. Chinese Science Bulletin 59, 4352-4358
15. Zhikun Ma, Quan Li, Xiujia Huan, Xiaoyan Yang*, Maolin Ye, 2014. Direct evidences of plant microremains for function of stone knives at Lajia site in Qinghai. Chinese Science Bulletin 59, 1151-1158.
16. Xiaoyan Yang*, Zhikun Ma, Quan Li, et al, 2014. Experiments with Lithic Tools: Understanding Starch Residues from Crop Harvesting. Archaeometry 56, 828-840.
17. Xiaoyan Yang*, Huw Barton*, Wan Zhiwei, et al, 2013. Sago-type palms were an important food before rice in southern subtropical China. PLoS ONE 8(5), e63148.
18. Xiaoyan Yang*, Linda Perry. 2013. Identification of ancient starch grains from the Tribe Triticeae in North China Plain. Journal of Archaeological Science 40, 3170-3177.
19. Xiaoyan Yang*, Zhiwei Wan, Linda Perry, et al. 2012. Early millet use in Northern China. Proceedings of the National Academy of Sciences of the United States of America 109, 3726-3730
20. Xiaoyan Yang*, Jianping Zhang, Linda Perry, et al. 2012. From the modern to the archaeological: starch grains from millets and their relatives. Journal of Archaeological Science 39, 245-257
21. Wan Zhiwei, Yang Xiaoyan, Ge Quansheng et al. 2012. Late Neolithic plant utilization at the middle reaches of the Gan River revealed by starch grain analysis. Science China Earth Sciences 55, 2084-2090.
22. Jianping Zhang, Houyuan Lu, Naiqin Wu, Xiaoyan Yang, Xianmin Diao. 2011. Phytolith analysis for differentiating between foxtail millet (Setaria italica) and green foxtail (Setaria viridis). PLoS ONE 6, 19726.
23. Xiaoyan Yang*, Leping Jiang. 2010. Starch grain analysis reveals ancient diet at Kuahuqiao site, Zhejiang Province. Chinese Sci Bull 55: 1150-1156
24. Mingqi Li, Xiaoyan Yang, Hui Wang, et al. 2010. Starch grains from dental calculus reveal ancient plant foodstuffs at Chenqimogou site, Gansu Province. Sci China Earth Sci, 53: 694-699.
25. Xiaoyan Yang*, Jincheng Yu, Houyuan Lu, et al, 2009. Starch grain analysis reveals function of grinding stone tools at Shangzhai site, Beijing. Sci China Ser D-Earth Sci 52(8): 1164-1171
26. Xiaoyan Yang*, Changjiang Liu, Jianping Zhang, et al. 2009. Crop remains from the outer burial pit of the Han Yangling Mausoleum and its significance to the agriculture in the Early Western Han Dynasty. Chinese Sci Bull, 54: 1738-1743.
27. Lu Houyuan, Zhang Jianping, Liu Kam-biu, Wu Naiqin, Li Yumei, Zhou Kunshu, Ye Maolin, Zhang Tianyu, Zhang Haijiang, Yang Xiaoyan, Shen Licheng, Xu Deke, Li Quan. 2009. Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago. Proceedings of the National Academy of Sciences of the United States of America 106: 7367-7372
28. Houyuan Lu, Xiaoyan Yang, Maolin Ye, et al. 2005. Millet noodles in late Neolithic China, Nature 437, 967-968.
29. Xiaoyan Yang*, Zhengkai Xia, Maolin Ye. 2003. Preliminary study on the prehistoric disasters at Lajia Site, Qinghai Province. Chinese Sci bull 48, 1877-1881.
30. 杨晓燕, 李昭, 王维维, 崔勇. 稻作南传:岭南稻作农业肇始的年代及人类社会的生计模式背景. 文博学刊. 2018, (1): 033-047.
31. 王维维, 马永超, 李昭, 马志坤, 杨晓燕*. 2018. 中国现代块根块茎类植物淀粉粒形态分析. 第四纪研究, 38 (6): 1409-1423
32. 马志坤, 郇秀佳, 马永超, 李珺, 杨晓燕*. 2018. 古代淀粉遗存反映的新石器中期华北平原北部旱作农业发展状况——以河北阳原姜家梁遗址为例. 第四纪研究, 38 (5): 1313-1324
33. 杨晓燕. 2017. 中国古代淀粉研究:进展与问题. 第四纪研究, 37: 163-177
34. 李昭, 赵婧, 李泉, 马志坤, 刘长, 尚杰, 刘长江, 杨晓燕*. 2016. 广东山地丘陵地带狮雄山遗址秦汉时期植物遗存分析. 第四纪研究, 36: 1253-1262
35. 马志坤, 杨晓燕*, 张弛, 孙永刚, 贾鑫. 2016. 西辽河地区全新世早中期粟类植物利用. 中国科学(D), 46: 918-925
36. 马永超, 吴文婉, 杨晓燕, 靳桂云. 2015.《诗经》与周代植物利用. 农业考古 (6), 32-41.
37. 郇秀佳, 李泉, 马志坤, 蒋乐平, 杨晓燕*. 2014. 浙江浦江上山遗址扇形水稻植硅体所反映的水稻驯化过程. 第四纪研究, 34(1), 106-113.
38. 吴文婉, 辛岩, 王海玉, 靳桂云, 杨晓燕. 2014. 辽宁阜新查海遗址早期生业经济研究——来自石器表层残留物淀粉粒的证据. 考古与文物, (2): 110-113.
39. 马志坤, 杨晓燕*, 李泉, 万智巍, 李明启, 葛全胜. 2012. 石器功能的现代模拟实验: 石刀表面残留物中淀粉粒来源分析. 第四纪研究, 32(2): 247-255.
40. 万智巍,杨晓燕,葛全胜, 等. 2012. 淀粉粒分析揭示的赣江中游地区新石器晚期人类对植物的利用情况. 中国科学(D), 52 (10): 1582-1589.
41. 万智巍,杨晓燕,葛全胜, 等. 2012. 基于淀粉粒分析的江西广丰社山头遗址植物资源利用. 地理科学进展, 31(5): 639-645.
42. 万智巍, 马志坤, 杨晓燕*, 张弛, 周光明, 樊昌生, 葛全胜. 2012. 江西万年仙人洞吊桶环遗址蚌器表面残留物淀粉粒分析及其环境指示. 第四纪研究, 32(2): 256-263.
43. 万智巍, 杨晓燕*, 李明启, 马志坤, 葛全胜. 2012. 中国常见现代淀粉粒数据库. 第四纪研究, 32(2): 361-362.
44. 万智巍,杨晓燕,葛全胜, 蒋梅鑫. 2011. 中国南方现代块根块茎类植物淀粉粒分析. 第四纪研究, 31 (4): 736-745
45. 李明启, 杨晓燕, 王辉, 王强, 贾鑫, 葛全胜. 2010. 甘肃临潭陈旗磨沟遗址古人牙结石中淀粉粒反映的古人类植物性食物. 中国科学, 40(4): 486-492.
46. 杨晓燕*, 孔昭宸, 刘长江, 葛全胜. 2010. 中国北方粟、黍及其野生近缘植物淀粉粒形态数据分析. 第四纪研究, 30 (2): 355-362
47. 杨晓燕*, 蒋乐平. 2010. 淀粉粒分析揭示浙江跨湖桥遗址人类的食物构成. 科学通报 55: 596-602
48. 杨晓燕*, 刘长江, 张健平等. 2009. 汉阳陵外藏坑农作物遗存分析及西汉早期农业. 科学通报 54: 1917-1921.
49. 杨晓燕*, 郁金城, 吕厚远, 崔天兴, 郭京宁, 刁现民, 孔昭宸, 刘长江, 葛全胜. 2009. 北京平谷上宅遗址磨盘磨棒功能分析:来自淀粉粒的证据. 39 (9): 1266-1273.
50. 杨晓燕*, 孔昭宸, 刘长江, 张芸, 葛全胜. 2009. 中国北方主要坚果类淀粉粒形态对比. 第四纪研究, 29(1): 153-158
51. 杨晓燕*, 刘东生. 2008. 欧亚大陆的黄土带与旧石器早期的人类活动. 第四纪研究, 28(6): 978-987
52. 杨晓燕*, 吕厚远, 夏正楷. 2006. 植物淀粉粒分析在考古学中的应用. 考古与文物(3): 87-91
53. 杨晓燕*, 夏正楷, 王涛. 2006. 全新世气候变化的尺度及其在环境考古中的应用程度. 东方考古(第三辑), 239-246.
54. 杨晓燕*, 夏正楷, 刘东生. 2005. 黄土研究与旧石器考古. 第四纪研究, 25(4): 461-466.
55. 杨晓燕*, 吕厚远, 刘东生, 韩家懋. 2005. 粟黍及狗尾草淀粉粒微形态特征及其在植物考古研究中的潜在意义. 第四纪研究, 25 (2): 224-227
56. 杨晓燕*, 夏正楷, 崔之久. 2005. 黄河上游全新世洪水及其沉积特征. 第四纪研究, 25(1): 80-85
57. 杨晓燕*, 夏正楷, 崔之久. 2005. 第四纪科学与环境考古. 地球科学进展, (2): 231-239
58. 杨晓燕*, 夏正楷, 崔之久. 2005. 环境考古学发展回顾与展望. 北京大学学报(自然科学版), 41(2): 329-334
59. 杨晓燕*, 夏正楷. 2004. 青海官亭盆地考古遗址堆积形态的环境背景. 地理学报, 59 (3):455-461.
60. 夏正楷, 杨晓燕. 2003. 我国北方4ka B.P.异常洪水事件的初步研究. 第四纪研究, 23(6): 667-674.
61. 夏正楷, 杨晓燕, 叶茂林. 2003. 青海民和齐家文化喇家遗址的灾难事件. 科学通报, 48(6): 1200-1204.
62. 崔之久,杨晓燕,夏正楷. 2002. 初探考古文化的区域分异. 第四纪研究, 22 (5): 434-441.
63. 莫多闻, 杨晓燕, 王辉. 2002. 红山文化牛河梁遗址形成的环境背景及其人地关系研究. 第四纪研究, 22 (2): 174-181
64. 杨晓燕*, 夏正楷. 2001. 中国环境考古学研究综述. 地球科学进展, 16 (6): 761-767.
65. 杨晓燕*. 2001. 从考古遗址地层堆积看自然灾害对人类社会的影响. 水土保持研究, 8(2): 66-68.
66. 莫多闻, 徐海鹏, 杨晓燕. 2000. 北京王府井东方广场旧石器晚期文化遗址的古环境背景. 北京大学学报(自然科学版), 36(2): 231~239.
67. 莫多闻, 朱忠礼, 杨晓燕. 2000. 我国西北冲积扇上的黄土.第四纪研究, 20(3): 294.a