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Lukowski, Samuel W., Rothnagel, Joseph A. and Trezise, Ann E. O. (2014) CFTR mRNA expression is regulated by an upstream open reading frame and RNA secondary structure in its 5' untranslated region. Human Molecular Genetics, 24 4: 899-912. doi:10.1093/hmg/ddu501
Andrews, Shea J. and Rothnagel, Joseph A. (2014) Emerging evidence for functional peptides encoded by short open reading frames. Nature Reviews: Genetics, 15 3: 193-204. doi:10.1038/nrg3520
Skarshewski, Adam, Stanton-Cook, Mitchell, Huber, Thomas, Al Mansoori, Sumaya, Smith, Ross, Beatson, Scott A. and Rothnagel, Joseph A. (2014) uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation. BMC Bioinformatics, 15 36: 1-6. doi:10.1186/1471-2105-15-36
Friend, Lexie R., Landsberg, Michael J., Nouwens, Amanda S., Wei, Ying, Rothnagel, Joseph A. and Smith, Ross (2013) Arginine methylation of hnRNP A2 does not directly govern its subcellular localization. PLoS One, 8 9: e75669.1-e75669.12. doi:10.1371/journal.pone.0075669
Tang, Yue Hang, Han, Siew Ping, Kassahn, Karin S., Skarshewski, Adam, Rothnagel, Joseph A. and Smith, Ross (2012) Complex evolutionary relationships among four classes of modular RNA-binding splicing regulators in eukaryotes: the hnRNP, SR, ELAV-Like and CELF proteins. Journal of Molecular Evolution, 75 5-6: 214-228. doi:10.1007/s00239-012-9533-0
Hofmeister, Wolfgang, Devine, Christine A., Rothnagel, Joseph A. and Key, Brian (2012) Frizzled-3a and slit2 genetically interact to modulate midline axon crossing in the telencephalon. Mechanisms of Development, 129 5-8: 109-124. doi:10.1016/j.mod.2012.05.004
Lauridsen, Lasse H., Rothnagel, Joseph A. and Veedu, Rakesh N. (2012) Enzymatic recognition of 2'-modified ribonucleoside 5'-triphosphates: Towards the evolution of versatile aptamers. ChemBioChem, 13 1: 19-25. doi:10.1002/cbic.201100648
Christie, Michael, Brosnan, Christopher A., Rothnagel, Joseph A. and Carroll, Bernard J. (2011) RNA decay and RNA silencing in plants: Competition or collaboration?. Frontiers in Plant Science, 2 DEC: 99.1-99.7. doi:10.3389/fpls.2011.00099
Han, Siew Ping, Kassahn, Karin S., Skarshewski, Adam, Ragan, Mark A., Rothnagel, Joseph A. and Smith, Ross (2010) Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts. RNA, 16 9: 1760-1768. doi:10.1261/rna.2142810
Han, Siew Ping, Friend, Lexie R., Carson, John H., Korza, George, Barbarese, Elisa, Maggipinto, Michael, Hatfield, Jodie T., Rothnagel, Joseph A. and Smith, Ross (2010) Differential subcellular distributions and trafficking functions of hnRNP A2/B1 spliceoforms. Traffic, 11 7: 886-898. doi:10.1111/j.1600-0854.2010.01072.x
Crowe, Mark L., Wang, Xue-Qing and Rothnagel, Joseph A. (2006) Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides. BMC genomics, 7 16: . doi:10.1186/1471-2164-7-16
Presland, R. B., Rothnagel, J. A. and Lawrence, O. T. (2006). Profilaggrin and the fused S100 family of calcium-binding proteins. In P. M. Elias and K. M. Feingold (Ed.), Skin Barrier (pp. 111-140) New York: Taylor & Francis.
Listwan, Pawel and Rothnagel, Joseph A. (2004) Keratin bundling proteins. Methods in Cell Biology, 78: Intermediate Filament Cytoskeleton 817-827. doi:10.1016/S0091-679X(04)78028-0
Wang, X. Q. and Rothnagel, J. A. (2004) 5 '-Untranslated regions with multiple upstream AUG codons can support low-level translation via leaky scanning and reinitiation. Nucleic Acids Research, 32 4: 1382-1391. doi:10.1093/nar/gkh305
McCart, A. E., Mahony, D. and Rothnagel, J. A. (2003) Alternatively spliced products of the human kinesin light chain 1 (KNS2) gene. Traffic, 4 8: 576-580. doi:10.1034/j.1600-0854.2003.00113.x
Zhang, D., Karunaratne, S., Kessler, M., Mahony, D. and Rothnagel, J. A. (2002) Characterization of mouse profilaggrin: Evidence for nuclear engulfment and translocation of the profilaggrin B-domain during epidermal differentiation. Journal of Investigative Dermatology, 119 4: 905-912. doi:10.1046/j.1523-1747.2002.00133.x