Boden, Mikael - University of Queensland - School of Chemistry and Molecular Biosciences

研究领域

Science Education Structural Biology and Biochemistry

近期论文

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Essebier, Alexandra, Wolf, Patricia Vera, Cao, Minh Duc, Carroll, Bernard J., Balasubramanian, Sureshkumar and Boden, Mikael (2016) Statistical enrichment of epigenetic states around triplet repeats that can undergo expansions. Frontiers in Neuroscience, 10 92.1-92.12. doi:10.3389/fnins.2016.00092 Cao, Minh Duc, Allison, Lloyd, Dix, Trevor I. and Boden, Mikael (2016) Robust estimation of evolutionary distances with information theory. Molecular Biology and Evolution, 33 5: 1349-1357. doi:10.1093/molbev/msw019 Cao, Minh Duc, Balasubramanian, Sureshkumar and Boden, Mikael (2015) Sequencing technologies and tools for short tandem repeat variation detection. Briefings in Bioinformatics, 16 2: 193-204. doi:10.1093/bib/bbu001 Patrick, Ralph, Lê Cao, Kim-Anh, Kobe, Bostjan and Bodén, Mikael (2014) PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. Bioinformatics, 31 3: 382-389. doi:10.1093/bioinformatics/btu663 Mehdi, Ahmed M., Patrick, Ralph, Bailey, Timothy L. and Boden, Mikael (2014) Predicting the dynamics of protein abundance. Molecular and Cellular Proteomics, 13 5: 1330-1340. doi:10.1074/mcp.M113.033076 Cao, Minh Duc, Tasker, Edward, Willadsen, Kai, Imelfort, Michael, Vishwanathan, Sailaja, Sureshkumar, Sridevi, Balasubramanian, Sureshkumar and Bodén, Mikael (2014) Inferring short tandem repeat variation from paired-end short reads. Nucleic Acids Research, 42 3: e16.1-e16.11. doi:10.1093/nar/gkt1313 Oyarzun, Patricio, Ellis, Jonathan J., Boden, Mikael and Kobe, Bostjan (2013) PREDIVAC: CD4+T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity. BMC Bioinformatics, 14 1: . doi:10.1186/1471-2105-14-52 Mehdi, Ahmed M., Sehgal, Muhammad Shoaib B., Kobe, Bostjan, Bailey, Timothy L. and Boden, Mikael (2013) DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. Bioinformatics, 29 1: 39-46. doi:10.1093/bioinformatics/bts654 Patrick, Ralph, Cao, Kim-Anh L., Davis, Melissa, Kobe, Bostjan and Bodén, Mikael (2012) Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Systems Biology, 6 60.1-60.15. doi:10.1186/1752-0509-6-60 Madala, Praveen K., Fairlie, David P. and Bodén, Mikael (2012) Matching cavities in G protein-coupled receptors to infer ligand-binding sites. Journal of Chemical Information and Modeling, 52 5: 1401-1410. doi:10.1021/ci2005498 Marfori, Mary, Mynott, Andrew, Ellis, Jonathan J., Mehdi, Ahmed M., Saunders, Neil F. W., Curmi, Paul M., Forwood, Jade K., Bodén, Mikael and Kobe, Bostjan (2011) Molecular basis for specificity of nuclear import and prediction of nuclear localization. Biochimica et Biophysica Acta (BBA): Molecular Cell Research, 1813 9: 1562-1577. doi:10.1016/j.bbamcr.2010.10.013 Bauer, Denis C., Willadsen, Kai, Buske, Fabian A., Lê Cao, Kim-Anh, Bailey, Timothy L., Dellaire, Graham and Bodén, Mikael (2011) Sorting the nuclear proteome. Bioinformatics, 27 13: i7-i14. doi:10.1093/bioinformatics/btr217 Mehdi, Ahmed M., Sehgal, Muhammad Shoaib B., Kobe, Bostjan, Bailey, Timothy L. and Boden, Mikael (2011) A probabilistic model of nuclear import of proteins. Bioinformatics, 27 9: 1239-1246. doi:10.1093/bioinformatics/btr121 Bailey, Timothy L., Bodén, Mikael, Whitington, Tom and Machanick, Philip (2010) The value of position-specific priors in motif discovery using MEME. BMC Bioinformatics, 11 179: 1-14. doi:10.1186/1471-2105-11-179 Buske, Fabian A., Their, Ricarda, Gillam, Elizabeth M. J. and Boden, Mikael (2009) In silico characterization of protein chimeras: Relating sequence and function within the same fold. Proteins: Structure, Function, and Bioinformatics, 77 1: 111-120. doi:10.1002/prot.22422 Buske, Fabian A., Maetschke, Stefan and Boden, Mikael (2009) It's about time: Signal recognition in staged models of protein translocation. Pattern Recognition, 42 4: 567-574. doi:10.1016/j.patcog.2008.09.020 Bailey, T. L., Boden, M. B., Buske, F. A., Frith, M., Grant, C. E., Clementi, L., Ren, J. Y., Li, W. W. and Noble, W. S. (2009) MEME suite: Tools for motif discovery and searching. Nucleic Acids Research, 37 Suppl. 2: W202-W208. doi:10.1093/nar/gkp335 Boden, M. and Bailey, T. L. (2008) Associating transcription factor-binding site motifs with target GO terms and target genes. Nucleic Acids Research, 36 12: 4108-4117. doi:10.1093/nar/gkn374