个人简介
徐云，博士，教授，博导。2002年中国科学技术大学计算机系博士毕业，获计算机软件与理论专业博士学位。1999年起在中国科学技术大学计算机学院、国家高性能计算中心（合肥）从事并行计算与应用相关的研究和教学工作。现为国家高性能计算中心（合肥）副主任和安徽省计算机学会秘书长，IEEE、ACM和中国计算机学会会员、中国计算机学会理论计算机科学专委会委员。近几年主要研究多核并行编程模型及性能优化、大规模程序和生物序列分析算法等。至今已主持国家重点自然科学基金子课题及面上课题、973子课题、863子课题多项，以及华为、中电14所等横向合作项目。在国内外重要学术期刊和会议发表学术论文80余篇
近期论文
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Haoyu Cheng, Yong Zhang and Yun Xu. BitMapper2: a GPU-accelerated all-mapper based on the sparse q-gram index. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16(3): 886-897.
Pengcheng Wang, Jeffrey Svajlenko, Yanzhao Wu, Yun Xu, Chanchal K. Roy. CCAligner: a token based large-gap clone detector. In Proceedings of the 40th International Conference on Software Engineering (ICSE'18). May 30 – June 1, 2018, Gothenburg, Sweden. pp. 1066-1077.
Haoyu Cheng, Ming Wu, Yun Xu. FMtree: A fast locating algorithm of FM-indexes for genomic data. Bioinformatics, 2018, 34(3): 416–424.
Haoyu Chen, Huaipan Jiang, Jiaoyun Yang, Yun Xu, Yi Shang. BitMapper: an efficient all-mapper based on bit-vector computing. BMC Bioinformatics, 2015, 16: 192.
Jiaoyun Yang, Yun Xu, Yi Shang and Guoliang Chen. A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem. IEEE Transactions on Knowledge and Data Engineering, 2014, 26(11): 2599-2609.
Weihua Pan, Yanan Zhao, Yun Xu*, Fengfeng Zhou. WinHAP2: an extremely fast haplotype phasing program for long genotype sequences. BMC Bioinformatics, 2014, 15:164.
Jiaoyun Yang, Yun Xu, Yi Shang. A new progressive algorithm for multiple longest common subsequences problem and its efficient parallelization. IEEE Trans. on Parallel and Distributed Systems, 2013, 24(5): 862-870.
Tao Yan, Rynson Lau, Yun Xu, Liusheng Huang. Depth Mapping for Stereoscopic Videos. International Journal of Computer Vision, 2013, 102: 293-307.
Jiaoyun Yang, Yun Xu, Xiaohui Yao, and Guoliang Chen. FNphasing: A novel fast heuristic algorithm for haplotype phasing based on flow network model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(2): 372-382.
Yun Xu, Jiaoyun Yang, Yuzhong Zhao, Yi Shang. Improved Voting Algorithms For Planted (l, d) Motif Search. Information Sciences, 2013, 237: 305-312.
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