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[1]Luo, Ling,Yang, Zhihao,Cao, Mingyu,Wang, Lei,Zhang, Yin,Lin, Hongfei.A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature[J],JOURNAL OF BIOMEDICAL INFORMATICS,2020,103:103384
[2]Diao, Yufeng,Lin, Hongfei,Yang, Liang,Fan, Xiaochao,Wu, Di,Yang, Zhihao,Wang, Jian,Xu, Kan.FBSN: A hybrid fine-grained neural network for biomedical event trigger identification[J],NEUROCOMPUTING,2020,381:105-112
[3]Luo Ling,Yang Zhihao,Cao Mingyu,Wang Lei,Zhang Yin,Lin Hongfei.A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature[J],Journal of biomedical informatics,2020,103:103384
[4]Shen, Chen,Lin, Hongfei,Guo, Kai,Xu, Kan,Yang, Zhihao,Wang, Jian.Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks[J],NEURAL COMPUTING & APPLICATIONS,2019,31(9,SI):4799-4808
[5]Shen, Chen,Lin, Hongfei,Fan, Xiaochao,Chu, Yonghe,Yang, Zhihao,Wang, Jian,Zhang, Shaowu.Biomedical event trigger detection with convolutional highway neural network and extreme learning machine[J],APPLIED SOFT COMPUTING,2019,84
[6]曹明宇,李青青,杨志豪,王磊,张音,林鸿飞,王健.基于知识图谱的原发性肝癌知识问答系统[J],中文信息学报,2019,33(6):88-93
[7]曹明宇,杨志豪,罗凌,林鸿飞,王健.基于神经网络的药物实体与关系联合抽取[J],计算机研究与发展,2019,56(7):1432-1440
[8]李青青,杨志豪,罗凌,林鸿飞,王健.基于多任务学习的生物医学实体关系抽取[J],中文信息学报,2019,33(8):84-92
[9]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian,Sun, Yuanyuan,Xu, Bo,Zhao, Zhehuan.Neural network-based approaches for biomedical relation classification: A review[J],JOURNAL OF BIOMEDICAL INFORMATICS,2019,99:103294
[10]Zhao, Di,Wang, Jian,Lin, Hongfei,Yang, Zhihao,Zhang, Yijia.Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network[J],JOURNAL OF BIOMEDICAL INFORMATICS,2019,99:103295-1032101
[11]Zhang, Tongxuan,Lin, Hongfei,Ren, Yuqi,Yang, Liang,Xu, Bo,Yang, Zhihao,Wang, Jian,Zhang, Yijia.Adverse drug reaction detection via a multihop self-attention mechanism[J],BMC BIOINFORMATICS,2019,20(1):479
[12]Liu, Xiaoxia,Yang, Zhihao,Sang, Shengtian,Lin, Hongfei,Wang, Jian,Xu, Bo.Detection of protein complexes from multiple protein interaction networks using graph embedding[J],ARTIFICIAL INTELLIGENCE IN MEDICINE,2019,96(,SI):107-115
[13]冯靖焜,杨志豪,罗凌,林鸿飞,王健.基于多示例学习的化学物致病关系抽取[J],山西大学学报（自然科学版）,2019,42(1):59-68
[14]Sang, Shengtian,Yang, Zhihao,Liu, Xiaoxia,Wang, Lei,Lin, Hongfei,Wang, Jian,Dumontier, Michel.GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures[J],IEEE ACCESS,2019,7:8404-8415
[15]Luo, Ling,Yang, Zhihao,Yang, Pei,Zhang, Yin,Wang, Lei,Wang, Jian,Lin, Hongfei.A neural network approach to chemical and gene/protein entity recognition in patents[J],JOURNAL OF CHEMINFORMATICS,2018,10(1):65
[16]Xu, Bo,Lin, Hongfei,Lin, Yuan,Ma, Yunlong,Yang, Liang,Wang, Jian,Yang, Zhihao.Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods[J],IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS,2018,15(6):1797-1809
[17]Liu, Xiaoxia,Yang, Zhihao,Sang, Shengtian,Zhou, Ziwei,Wang, Lei,Zhang, Yin,Lin, Hongfei,Wang, Jian,Xu, Bo.Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks[J],BMC BIOINFORMATICS,2018,19(1):332
[18]Luo, Ling,Yang, Zhihao,Lin, Hongfei,Wang, Jian.Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach[J],DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,2018,2018
[19]杨培,杨志豪,罗凌,林鸿飞,王健.基于注意机制的化学药物命名实体识别[J],计算机研究与发展,2018,55(7):1548-1556
[20]赵哲焕,杨志豪,孙聪,林鸿飞.生物医学文献中的蛋白质关系抽取研究[J],中文信息学报,2018,32(7):82-90
[21]Liu, Xiaoxia,Yang, Zhihao,Zhou, Ziwei,Sun, Yuanyuan,Lin, Hongfei,Wang, Jian,Xu, Bo.The impact of protein interaction networks' characteristics on computational complex detection methods[J],JOURNAL OF THEORETICAL BIOLOGY,2018,439:141-151
[22]刁宇峰,林鸿飞,吴迪,杨亮,许侃,张绍武,杨志豪,王健.WECA：A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition[A],EMNL 2018: 2507-2516,2018,2507-2516
[23]徐博,林鸿飞,杨亮,许侃,张益嘉,张冬瑜,杨志豪,王健.Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion[A],BIBM2018,2018,556-559
[24]李智恒,桂颖溢,杨志豪,林鸿飞,王健.基于生物医学文献的化学物质致病关系抽取[J],计算机研究与发展,2018,55(1):198-206
[25]Zheng, Wei,Lin, Hongfei,Li, Zhiheng,Liu, Xiaoxia,Li, Zhengguang,Xu, Bo,Zhang, Yijia,Yang, Zhihao,Wang, Jian.An effective neural model extracting document level chemical-induced disease relations from biomedical literature.[J],Journal of biomedical informatics,2018,83:1-9
[26]Wang, Jian,Lin, Hongfei,Dong, Hualei,Xiong, Daping,Yang, Zhihao.Exploring Answer Information for Question Classification in Community Question Answering[J],JOURNAL OF MULTIPLE-VALUED LOGIC AND SOFT COMPUTING,2018,31(1-2):67-84
[27]Sang, Shengtian,Yang, Zhihao,Wang, Lei,Liu, Xiaoxia,Lin, Hongfei,Wang, Jian.SemaTyP: a knowledge graph based literature mining method for drug discovery.[J],BMC bioinformatics,2018,19(1):193
[28]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian,Zhang, Shaowu,Sun, Yuanyuan,Yang, Liang.A hybrid model based on neural networks for biomedical relation extraction.[J],Journal of biomedical informatics,2018,81:83-92
[29]Zhao, Zhehuan,Yang, Zhihao,Luo, Ling,Wang, Lei,Zhang, Yin,Lin, Hongfei,Wang, Jian.Disease named entity recognition from biomedical literature using a novel convolutional neural network[J],IEEE International Conference on Bioinformatics and Biomedicine (BIBM) -Medical Genomics,2017,10(Suppl 5):73
[30]Wang Anran,Wang Jian,Lin Hongfei,Zhang Jianhai,Yang Zhihao,Xu Kan.A multiple distributed representation method based on neural network for biomedical event extraction[J],BMC medical informatics and decision making,2017,17(Suppl 3):171
[31]Luo Ling,Yang Zhihao,Yang Pei,Zhang Yin,Wang Lei,Lin Hongfei,Wang Jian.An Attention-based BiLSTM-CRF Approach to Document-level Chemical Named Entity Recognition.[J],Bioinformatics (Oxford, England),2017,34(8):1381-1388
[32]Zhang Yijia,Zheng Wei,Lin Hongfei,Wang Jian,Yang Zhihao,Dumontier Michel.Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.[J],Bioinformatics (Oxford, England),2017,34(5):828-835
[33]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian,Liu, Yiwei.An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks[J],BMC GENOMICS,2017,18(Suppl 7):743
[34]Zheng, Wei,Lin, Hongfei,Luo, Ling,Zhao, Zhehuan,Li, Zhengguang,Zhang, Yijia,Yang, Zhihao,Wang, Jian.An attention-based effective neural model for drug-drug interactions extraction[J],BMC BIOINFORMATICS,2017,18(1):445
[35]黄栋,徐博,许侃,林鸿飞,杨志豪.基于词向量和 ＥＭＤ距离的短文本聚类[J],山东大学学报(理学版),2017,07:1-6
[36]Mu, Yashuang,Liu, Xiaodong,Yang, Zhihao,Liu, Xiaolin.A parallel C4.5 decision tree algorithm based on MapReduce[J],CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE,2017,29(8)
[37]王健,李虹磊,林鸿飞,杨志豪,张绍武.基于神经网络的微生物生长环境关系抽取方法[J],华南理工大学学报（自然科学版）,2017,45(3):76-81
[38]Guo, Kai,Lin, Hongfei,Xu, Bo,Yang, Zhihao,Wang, Jian,Sun, Yuanyuan,Xu, Kan.Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models[A],BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2017),2017,10330:373-378
[39]Wang A.,Wang J.,Lin H.,Zhang J.,Yang Z.,Xu K..Biomedical event extraction based on distributed representation and deep learning[A],2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016,2017,775-
[40]Zhao Z.,Yang Z.,Luo L.,Zhang Y.,Wang L.,Lin H.,Wang J..ML-CNN: A novel deep learning based disease named entity recognition architecture[A],2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016,2017,794-
[41]Zhao, Zhehuan,Yang, Zhihao,Sun, Cong,Wang, Lei,Lin, Hongfei.A Hybrid Protein-Protein Interaction Triple Extraction Method for Biomedical Literature[A],2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE(BIBM),2017,2017-January:1515-1521
[42]Li Z.,Yang Z.,Lin H.,Wang J.,Gui Y.,Zhang Y.,Wang L..CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature[A],2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016,2017,994-1001
[43]黄栋,徐博,许侃,林鸿飞,杨志豪.基于词向量和EMD距离的短文本聚类[J],山东大学学报（理学版）,2017,52(7):66-72
[44]Zhou, Ziwei,Gui, Yingyi,Yang, Zhihao,Liu, Xiaoxia,Wang, Lei,Zhang, Yin,Lin, Hongfei,Wang, Jian.Disease-specific protein complex detection in the human protein interaction network with a supervised learning method[A],IEEE International Conference on Bioinformatics and Biomedicine (IEEEBIBM),2016,1296-1301
[45]Xu, Bo,Lin, Hongfei,Zhao, Mingzhen,Yang, Zhihao,Wang, Jian,Zhang, Shaowu.Detecting potential adverse drug reactions from health-related social networks[J],Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),2016,10102:523-530
[46]Zhao, Zhehuan,Yang, Zhihao,Luo, Ling,Lin, Hongfei,Wang, Jian.Drug drug interaction extraction from biomedical literature using syntax convolutional neural network[J],BIOINFORMATICS,2016,32(22):3444-3453
[47]Xu, Bo,Lin, Hongfei,Hao, Huihui,Yang, Zhihao,Wang, Jian,Zhang, Shaowu.Generating User-oriented Text Summarization Based on Social Networks Using Topic Models[A],5th National Conference on Social Media Processing (SMP),2016,669:186-193
[48]Wang, Jian,Zhang, Jianhai,An, Yuan,Lin, Hongfei,Yang, Zhihao,Zhang, Yijia,Sun, Yuanyuan.Biomedical event trigger detection by dependency-based word embedding[J],IEEE International Conference on Bioinformatics and Biomedicine,2016,9(Suppl 2):45
[49]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian,Liu, Yiwei,Sang, Shengtian.A method for predicting protein complex in dynamic PPI networks[J],12th Annual Biotechnology and Bioinformatics Symposium (BIOT),2016,17(Suppl 7):229
[50]Zheng, Wei,Lin, Hongfei,Zhao, Zhehuan,Nu, Bo,Zhang, Yijia,Yang, Zhihao,Wang, Jian.A graph kernel based on context vectors for extracting drug-drug interactions[J],JOURNAL OF BIOMEDICAL INFORMATICS,2016,61:34-43
[51]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian.Construction of dynamic probabilistic protein interaction networks for protein complex identification[J],BMC BIOINFORMATICS,2016,17(1):186
[52]冯钦林,杨志豪,林鸿飞.疾病-病症和病症-治疗物质的关系抽取研究[J],计算机工程与应用,2016,53(10):251-257
[53]李智恒,杨志豪,林鸿飞.基于语义的疾病相关蛋白质知识抽取[J],山东大学学报（理学版）,2016,51(3):104-110
[54]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian.Dynamic Protein Complex Identification in Uncertain Protein-Protein Interaction Networks[A],12th International Symposium on Bioinformatics Research and Applications(ISBRA),2016,9683:319-320
[55]李宗耀,杨志豪,吴晓芳,林鸿飞,宫本东,王健.基于语义资源的生物医学文献知识发现研究[J],中文信息学报,2016,30(1):176-182
[56]王健,林鸿飞,杨志豪.DUTIR in BioNLP-ST 2016 Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations[A],2016,93-100
[57]Feng, Qinlin,Gui, Yingyi,Yang, Zhihao,Wang, Lei,Li, Yuxia.Semisupervised Learning Based Disease-Symptom and Symptom-Therapeutic Substance Relation Extraction from Biomedical Literature[J],BIOMED RESEARCH INTERNATIONAL,2016,2016
[58]李浩瑞,王健,林鸿飞,杨志豪,张益嘉.基于混合模型的生物事件触发词检测[J],中文信息学报,2016,30(1):36-42
[59]Zhao, Zhehuan,Yang, Zhihao,Luo, Ling,Zhang, Yin,Wang, Lei,Lin, Hongfei,Wang, Jian.ML-CNN: a novel deep learning based disease named entity recognition architecture[A],IEEE International Conference on Bioinformatics and Biomedicine (IEEEBIBM),2016,794-794
[60]林鸿飞,杨志豪,王健,张绍武.Detecting Potential Adverse Drug Reactions from Health-Related Social Networks[A],2016,523-530
[61]杨娅,杨志豪,林鸿飞,宫本东,王健.MBNER:面向生物医学领域的多种实体识别系统[J],中文信息学报,2016,30(1):170
[62]Zhao, Zhehuan,Yang, Zhihao,Lin, Hongfei,Wang, Jian,Gao, Song.A protein-protein interaction extraction approach based on deep neural network[J],INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS,2016,15(2):145-164
[63]Wang, Anran,Wang, Jian,Lin, Hongfei,Zhang, Jianhai,Yang, Zhihao,Xu, Kan.Biomedical Event Extraction Based on Distributed Representation and Deep Learning[A],IEEE International Conference on Bioinformatics and Biomedicine (IEEEBIBM),2016,775-775
[64]Li, Zhiheng,Yang, Zhihao,Lin, Hongfei,Wang, Jian,Gui, Yingyi,Zhang, Yin,Wang, Lei.CIDExtractor: a chemical-induced disease relation extraction system for biomedical literature[A],IEEE International Conference on Bioinformatics and Biomedicine (IEEEBIBM),2016,994-1001
[65]Wang, Jian,Li, Honglei,An, Yuan,Lin, Hongfei,Yang, Zhihao.Biomedical event trigger detection based on convolutional neural network[J],INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS,2016,15(3):195-213
[66]Liu, Xiaoxia,Lin, Hongfei,Yang, Zhihao.Predicting User Relationship from Scratch[A],4th National Conference on Social Media Processing (SMP),2015,568:176-183
[67]Zhao, Mingzhen,Xu, Bo,Lin, Hongfei,Yang, Zhihao,Wang, Jian.Discover Potential Adverse Drug Reactions Using the Skip-gram Model[A],IEEE International Conference on Bioinformatics and Biomedicine,2015,1765-1767
[68]Zhao, Zhehuan,Yang, Zhihao,Luo, Ling,Lin, Hongfei,Wang, Jian,Gao, Song.Deep Neural Network Based Protein-Protein Interaction Extraction from Biomedical Literature[A],IEEE International Conference on Bioinformatics and Biomedicine,2015,1156-1156
[69]Xu, Bo,Lin, Hongfei,Lin, Yuan,Ma, Yunlong,Yang, Liang,Wang, Jian,Yang, Zhihao.Learning to Rank for Biomedical Information Retrieval[A],IEEE International Conference on Bioinformatics and Biomedicine,2015,464-469
[70]Wang, Jian,Zhang, Jianhai,An, Yuan,Lin, Hongfei,Yang, Zhihao,Zhang, Yijia,Sun, Yuanyuan.Biomedical Event Trigger Detection by Dependency-Based Word Embedding[A],IEEE International Conference on Bioinformatics and Biomedicine,2015,429-432
[71]Dong, Hualei,Wang, Jian,Lin, Hongfei,Xu, Bo,Yang, Zhihao.Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering[A],Ninth International Conference on Frontier of Computer Science andTechnology,2015,13-18
[72]Yu, Feng Ying,Yang, Zhi Hao,Hu, Xiao Hua,Sun, Yuan Yuan,Lin, Hong Fei,Wang, Jian.Protein complex detection in PPI networks based on data integration and supervised learning method[J],BMC BIOINFORMATICS,2015,16(12)
[73]Xu, Rudan,Sun, Yuanyuan,Yang, Zhihao,Song, Bo,Hu, Xiaopeng.The Classification of HEp-2 Cell Patterns Using Fractal Descriptor[J],IEEE International Conference on Bioinformatics and Biomedicine (IEEEBIBM),2015,14(5,SI):513-520
[74]Sang, Shengtian,Yang, Zhihao,Li, Zongyao,Lin, Hongfei.Supervised Learning Based Hypothesis Generation from Biomedical Literature[J],BIOMED RESEARCH INTERNATIONAL,2015,2015:698527
[75]Wu, Xiaofang,Yang, Zhihao,Li, ZhiHeng,Lin, Hongfei,Wang, Jian.Disease Related Knowledge Summarization Based on Deep Graph Search[J],BIOMED RESEARCH INTERNATIONAL,2015,2015:428195
[76]Wang J.,Liu M.,Lin H.,Yang Z.,Zhang Y.,Wen J.,Yang C..Combining active learning and composite kernel for protein-protein interaction extraction[J],Journal of Computational Information Systems,2015,11(8):2823-2832
[77]Zhang, Yijia,Lin, Hongfei,Yang, Zhihao,Wang, Jian.Integrating experimental and literature protein-protein interaction data for protein complex prediction[J],BMC GENOMICS,2015,16
[78]吴晓芳,杨志豪,林鸿飞,王健.基于语义关系的疾病知识提取系统[J],计算机工程,2015,41(1):284-288,295
[79]吴晓芳,杨志豪,林鸿飞,王健.吴晓芳,杨志豪,林鸿飞,王健. 基于语义关系的疾病知识提取系统[J],计算机工程,2015,11(1):284-288
[80]Cheng, Liangxi,Lin, Hongfei,Zhou, Feng,Yang, Zhihao,Wang, Jian.Enhancing the accuracy of knowledge discovery: a supervised learning method[J],BMC BIOINFORMATICS,2014,15(12)
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