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Representative Publications
Journal Publication
Choi, G.C.G., Zhou, P., Yuen, C.T.L., Chan, B.K.C., Xu, F., Bao, S., Chu, H.Y., Thean, D., Tan, K., Wong, K.H., Zheng, Z., Wong, A.S.L. “Combinatorial mutagenesis en masse optimizes the genome editing activities of SpCas9” Nature Methods 2019.
https://www.nature.com/articles/s41592-019-0473-0
Petrenko, N. *, Jin, Y. *, Dong, L., Wong, K.H. *# and Struhl, K#. “Requirements for RNA polymerase II preinitiation complex formation in vivo.” eLife 2019; 8:e43654. (* Equal contribution; # Corresponding author)
https://doi.org/10.7554/eLife.43654
Kim, S.H., Iyer, K.R., Pardeshi, L., Munoz, J.F., Robbins, N., Cuomo, C.A., Wong, K.H., Cowen, L.E. “Genetic analysis of Candida auris implicates Hsp90 in morphogenesis and Azole tolerance and Cdr1 in Azole resistance.” MBio 2019; 10(1). pII:e02529-18.
https://mbio.asm.org/content/10/1/e02529-18
Vassiliadis, D., Wong, K.H., Andrianopoulos, A., Monahan, B.J. “A genome-wide analysis of carbon catabolite repression in Schizosaccharomyces pombe.” BMC Genomics 2019; 20(1):251.https://doi.org/10.1186/s12864-019-5602-8
Qin, L., Li, A., Tan, K., Guo, S., Chen, Y., Wang, F., and Wong, K.H. “Universal plasmids to facilitate gene deletion and gene tagging in filamentous fungi.” Fungal Genetics and Biology 2019; 125:28-35.
https://doi.org/10.1016/j.fgb.2019.01.004
Tan, K., and Wong, K.H. “RNA polymerase II ChIP-seq—a powerful and highly affordable method for studying fungal genomics and physiology.” Biophysical Reviews
https://rdcu.be/bf1ib
Zhang, B., Lyu, J., Liu, Y., Wu, C., Yang, E.J., Pardeshi, L., Tan, K., Wong, K.H., Chen, Q., Xu, X., Deng C. and Shim, J.S. “BRCA1 deficiency sensitizes breast cancer cells to bromodomain and extra-terminal domain (BET) inhibition.” Oncogene 2018; 37:6341-6356.
https://doi.org/10.1038/s41388-018-0408-8<
Sun, H., Miao, Z., Zhang, X., Chan, U.I., Su, S.M., Guo, S., Wong, K.H., Xu, X., and Deng. C.X. “Single-cell RNA-Seq reveals cell heterogeneity and hierarchy within mouse mammary epithelia.” Journal of Biological Chemistry 2018; 293(22) 8315–8329.
http://www.jbc.org/content/early/2018/04/17/jbc.RA118.002297
Wang, H., Pardeshi, L.A., Rong, X., Li, E., Wong, K.H., Peng, Y., and Xu, R.H. “Novel variants identified in multiple sclerosis patients from southern China.” Frontiers in Neurology 2018; 9:582.
https://doi.org/10.3389/fneur.2018.00582
Veri, A.O., Miao, Z., Shapiro, R.S., Tebbji, F., O’Meara, T.R., Kim, S.H., Colazo, J., Tan, K., Vyas, V.K., Whiteway, M., Robbins, N., Wong, K.H., and Cowen L.E. “Tuning Hsf1 levels drives distinct fungal morphogenetic programs with depletion impairing Hsp90 function and overexpression expanding the target space.” PLoS Genetics 2018; 14(3): e1007270.
https://doi.org/10.1371/journal.pgen.1007270
Xie, J.L., Qin, L., Miao, Z., Grys, B.T., Diaz, J.D.L.C., Ting, K., Krieger, J.R., Tong, J., Tan, K., Leach, M.D., Ketela, T., Moran, M.F., Krysan, D.J., Boone, C., Andrews, B.J., Selmecki, A., Wong, K.H., Robbins, N. and Cowen, L.E. “The Candida albicans Transcription Factor Cas5 Couples Stress Responses, Drug Resistance, and Cell Cycle Regulation.” Nature Communications 2017; 8(1):499.
https://www.nature.com/articles/s41467-017-00547-y
Petrenko, N. *, Jin, Y. *, Wong, K.H. * and Struhl, K. “Evidence that Mediator is essential for Pol II transcription, but is not a required component of the preinitiation complex in vivo.” eLife 2017; 6:e28447. (* Equal contribution)
https://doi.org/10.7554/eLife.28447.001
Jiang, B., Yan, L., Miao, Z., Li, E.-Q., Wong, K.H. and Xu, R.-H. “Spheroidal formation preserves human stem cells for prolonged time under ambient conditions for facile storage and transportation.” Biomaterials 2017; 133:275-86.
https://doi.org/10.1016/j.biomaterials.2017.03.050
Szot, P.S., Yang, A., Wang, X., Parsania, C., Rohm, U., Wong, K.H. and Ho, J.W.K. “PBrowse: a web-based platform for real-time collaborative exploration of genomic data.” Nucleic Acids Research. 2017; 45 (9): e67.
https://doi.org/10.1093/nar/gkw1358
Petrenko, N. *, Jin, Y. *, Wong, K.H. *# and Struhl, K#. “Mediator undergoes a compositional change during transcriptional activation.” Molecular Cell. 2016; 64(3):443-454. (* Equal contribution; # Corresponding author)
https://doi.org/10.1016/j.molcel.2016.09.015
Featured in: Malik, S., and Roeder, G.R. “Mediator: A Drawbridge across the Enhancer-Promoter Divide.” Molecular Cell. 2016; 64(3):433-434.
https://doi.org/10.1016/j.molcel.2016.10.024
Leach, M.D., Farrer, R.A., Tan, K., Miao, Z., Walker, L.A., Cuomo, C.A., Wheeler, R.T., Brown, A.J.P., Wong, K.H. and Cowen, L.E. “Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodeling and chromatin architecture in Candida albicans.” Nature Communications. 2016 7:11704.
https://www.nature.com/articles/ncomms11704
Wong, K.H. *, Jin, Y. *, and Struhl, K. “TFIIH phosphorylation of the Pol II CTD stimulates Mediator dissociation from the preinitiation complex and promoter escape.” Molecular Cell. 2014; 54(4): 601-612. (* Equal contribution)
https://doi.org/10.1016/j.molcel.2014.03.024
Downes, D.J., Davis, M.A., Wong, K.H., Kreutzberger, S.D., Hynes, M.J., and Todd, R.B. “Dual DNA binding and coactivator functions of Aspergillus nidulans TamA, a Zn(II)2Cys6 transcription factor.” Molecular Microbiology. 2014 Jun;92(6):1198-211.
https://doi.org/10.1111/mmi.12620
Hunter, C.C., Siebert, K.S., Downes, D.J., Wong, K.H., Kreutzberger, S.D., Fraser, J.A., Clarke, D.F., Hynes, M.J., Davis, M.A., and Todd, R.B. “Multiple Nuclear Localization Signals Mediate Nuclear Localization of the GATA Transcription Factor AreA.” Eukaryotic Cell. 2014; 13(4):527-38.
https://ec.asm.org/content/13/4/527
Wong, K.H.*, Jin, Y., and Moqtederi, Z. “Multiplex Illumina sequencing using DNA-barcoding.” Current Protocol in Molecular Biology. 2013; Chapter 7:Unit 7.11. (Invited protocol) (* Corresponding author)
https://doi.org/10.1002/0471142727.mb0711s101
Suzuki, Y., Murray, S., Wong, K.H., Davis, M.A., and Hynes, M.J. “Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in Aspergillus nidulans.” Molecular Microbiology. 2012 84(5):942-64.
https://doi.org/10.1111/j.1365-2958.2012.08067.x
Wong, K.H., and Struhl, K. “The Cyc8−Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein.” Genes and Development. 2011 Dec 1; 25: 2525-2539.
http://www.genesdev.org/cgi/doi/10.1101/gad.179275.111
Featured in: Parnell, E.J., and Stillman, D.J. “Shields up: the Tup1−Cyc8 repressor complex blocks coactivator recruitment.” Genes and Development. 2011 Dec 1, 25: 2429-2435.
http://www.genesdev.org/cgi/doi/10.1101/gad.181768.111
Tirosh, I.*, Wong, K.H.*, Barkai, N., and Struhl, K. “Extensive divergence of yeast stress responses through transitions between induced and constitutive activation.” Proceedings of the National Academy of Sciences of USA. 2011 Oct 4; 108(40):16693-8. (* Equal contribution)
https://doi.org/10.1073/pnas.1113718108
Suk, K., Choi, J., Suzuki, Y., Ozturk, SB., Mellor, JC., Wong, K.H., MacKay, JL., Gregory, R.I., and Roth, F.P. “Reconstitution of human RNA interference in budding yeast.” Nucleic Acids Research. 2011 Apr; 39(7):e43.
https://doi.org/10.1093/nar/gkq1321
Fan, X., Geisberg, J.V., Wong, K.H., and Jin, Y., “Conditional depletion of nuclear proteins by the anchor away system.” Current Protocol in Molecular Biology. 2011 Jan; Chapter 13:Unit13.10B. (Invited protocol)
https://doi.org/10.1002/0471142727.mb1310bs93
Wong, K.H., Hynes, M.J., Todd, R.B., and Davis, M.A. “Deletion and overexpression of the Aspergillus nidulans GATA factor AreB reveals unexpected pleiotropy.” Microbiology. 2009 Dec; 155(Pt 12):3868-80.
https://dx.doi.org/10.1099/mic.0.031252-0
Wong, K.H., Hynes, M.J., and Davis, M.A. “Recent advances in nitrogen regulation: a comparison between yeast and filamentous fungi.” Mini-review. Eukaryotic Cell. 2008 7(6):917-925.
https://ec.asm.org/content/7/6/917
Wong, K.H., Todd, R.B., Oakley, B.R., Oakley, C.E, Hynes, M.J., and Davis, M.A. “Sumoylation in Aspergillus nidulans: sumO inactivation, overexpression and live-cell imaging.” Fungal Genetics and Biology. 2008 45:728-737.
https://doi.org/10.1016/j.fgb.2007.12.009
Wong, K.H., Hynes, M.J., Todd, R.B., and Davis, M.A. “Transcriptional control of nmrA by the bZIP transcription factor MeaB reveals a new level of nitrogen regulation in Aspergillus nidulans.” Molecular Microbiology. 2007 66(2):534-551.
https://doi.org/10.1111/j.1365-2958.2007.05940.x
Todd, R.B., Fraser, J.A., Wong, K.H., Davis, M.A., and Hynes, M.J. “Nuclear accumulation of the GATA factor AreA in response to complete nitrogen starvation by regulation of nuclear export.” Eukaryotic Cell. 2005 4(10): 1646-1653.
https://ec.asm.org/content/4/10/1646.long
Book Chapter
Davis, M.A. and Wong, K.H. “Chapter 23: Nitrogen Metabolism in Filamentous Fungi.” In: Cellular and Molecular Biology of Filamentous Fungi edited by Borkovich, Katherine A. and Ebbole, Daniel J. © 2010 American Society for Microbiology (ASM). (Invited book chapter)