近期论文
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主要代表性论文：
1. Jianbo Xie, Kecheng Qian, Jingna Si, Liang Xiao, Dong Ci, and Deqiang Zhang*. Conserved noncoding sequences conserve biological networks and influence genome evolution. Heredity, 2018, doi: 10.1038/s41437-018-0055-4
2. Chenrui Gong, Qingzhang Du, Jianbo Xie, Mingyang Quan, Beibei Chen, and Deqiang Zhang*. Dissection of insertion-deletion (InDel) variants within differentially-expressed genes involved in wood formation in Populus. Frontiers in Plant Science, 2018, 8: 2199
3. Jianbo Xie, Xiaohui Yang, Yuepeng Song, Qingzhang Du, Ying Li, Jinhui Chen, and Deqiang Zhang*. Adaptive evolution and functional innovation of Populus-specific recently evolved miRNAs. New Phytologist, 2017, 213: 206-219
4. Daling Zhou, Qingzhang Du, Jinhui Chen, Qingshi Wang, and Deqiang Zhang*. Identification and allelic dissection uncover roles of lncRNAs in secondary growth of Populus tomentosa. DNA Research, 2017, 24: 473-486
5. Ying Li, Yuepeng Song, Baohua Xu, Jianbo Xie, and Deqiang Zhang*. Poplar CBF1 functions specifically in an integrated cold regulatory network. Tree Physiology, 2017, 37 (1): 98-115
6. Wan Shi, Mingyang Quan, Qingzhang Du, and Deqiang Zhang*. The interactions between the long noncoding RNA NERDL and its target gene affect wood formation in Populus tomentosa. Frontiers in Plant Science, 2017, 8: 1035
7. Liang Xiao, Mingyang Quan, Qingzhang Du, Jinhui Chen, Jianbo Xie, and Deqiang Zhang*. Allelic interactions among Pto-MIR475b and its four target genes potentially affect growth and wood properties in Populus. Frontiers in Plant Science, 2017, 8: 1055
8. Longxin Wang, Bowen Wang, Qingzhang Du, Jinhui Chen, Jiaxing Tian, Xiaohui Yang, and Deqiang Zhang*. Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa. Molecular Genetics and Genomics, 2017, 292: 77-91
9. Qingzhang Du, Chenrui Gong, Qingshi Wang, Daling Zhou, Haijiao Yang, Wei Pan, Bailian Li and Deqiang Zhang*. Genetic architecture of growth traits in Populus revealed by integrated QTL analysis and association studies. New Phytologist, 2016, 209(3): 1067-1082
10. Jinhui Chen, Jianbo Xie, Beibei Chen, Mingyang Quan, Ying Li, Bailian, and Deqiang Zhang*. Genetic variations and miRNA-target interactions contribute to natural phenotypic variations in Populus. New Phytologist, 2016, 212(1): 150-160
11. Dong Ci, Yuepeng Song, Qingzhang Du, Min Tian, Shuo Han and Deqiang Zhang*. Variation in genomic methylation in natural populations of Populus simonii is associated with leaf shape and photosynthetic traits. Journal of Experimental Botany, 2016, 67(3): 723-737
12. Yuepeng Song, Dong Ci, Min Tian and Deqiang Zhang*. Stable methylation of a noncoding RNA gene regulates gene expression in response to abiotic stress in Populus simonii. Journal of Experimental Botany, 2016, 67(5): 1477-1492
13. Jiaxing Tian, Yuepeng Song, QingzhangDu, Xiaohui Yang, Dong Ci, Jinhui Chen, Jianbo Xie, Bailian Li, and Deqiang Zhang*. Population genomic analysis of gibberellin-responsive long noncoding RNAs in Populus. Journal of Experimental Botany, 2016, 67(8): 2467-2482
14. Jianbo Xie, Jiaxing Tian, QingzhangDu, Jinhui Chen, Ying Li, Xiaohui Yang, Bailian Li, and Deqiang Zhang*. Association genetics and transcriptome analysis reveal a GA-responsive pathway involved in regulating photosynthesis. Journal of Experimental Botany, 2016, 67(11): 3325-3338
15. Beibei Chen, Qingzhang Du, Jinhui Chen, Xiaohui Yang, Jiaxing Tian, Bailian Li and Deqiang Zhang*. Dissection of allelic interactions among Pto-miR257 and its targets and their effects on growth and wood properties in Populus. Heredity, 2016, 117 (2): 73-83
16. Qingshi Wang, Dong Ci, Tong Li, Peiwen Li, YuePeng Song, Jinhui Chen, Mingyang Quan, Daling Zhou, and Deqiang Zhang*. The role of DNA methylation in xylogenesis in different tissues of poplar. Frontiers in Plant Science, 2016, 7: 1003
17. Mingyang Quan, Qingshi Wang, Souksamone Phangthavong, Xiaohui Yang, Yuepeng Song, Qingzhang Du, and Deqiang Zhang*. Association studies in Populus tomentosa reveal the genetic interactions of Pto-MIR156c and its targets in wood formation. Frontiers in Plant Science, 2016, 7: 1159
18. Mingyang Quan, Jiaxing Tian, XiaohuiYang, Qingzhang Du, Yuepeng Song, Qingshi Wang, Jinhui Chen and Deqiang Zhang*. Association studies reveal the effect of genetic variation in lncRNA UGTRL and its putative target PtoUGT88A1 on wood formation in Populus tomentosa. Tree Genetics & Genomes, 2016,12(1): 8
19. Jiaxing Tian, Jinhui Chen, Bailian Li and Deqiang Zhang*. Association genetics in Populus reveals the interactions between Pto-miR160a and its target Pto-ARF16. Molecular Genetics and Genomics, 2016, 291(3), 1069-1082
20. Qingzhang Du, Zunzheng Wei, Xing Zhao, Xiaohui Yang, Dong Ci, and Deqiang Zhang*. Dissection of additive, dominant, epistatic roles of allelic variation within heat shock factor genes in Chinese indigenous poplar (Populus simonii). Tree Genetics & Genomes, 2016, 12:91
21. Haijiao Yang, Xiaohui Yang, Longxin Wang, Chenrui Gong, Beibei Chen, Qingzhang Du, and Deqiang Zhang*. Single nucleotide polymorphisms in two GID1s orthologs associate with growth and wood property traits in Populus tomentosa. Tree Genetics & Genomes, 2016, 12: 109-
22. Yuepeng Song, Min Tian, Dong Ci, and Deqiang Zhang*. Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar. Journal of Experimental Botany, 2015, 66(7): 1891–1905
23. Qingzhang Du, Jiaxing Tian, Xiaohui Yang, Wei Pan, Baohua Xu, Bailian Li, P?r K. Ingvarsson, and Deqiang Zhang*. Identification of additive, dominant and epistatic variation conferred by key genes in cellulose biosynthesis pathway in Populus tomentosa. DNA Research, 2015, 22(1):53–67
24. Jinhui Chen, Beibei Chen, Xiaohui Yang, Jiaxing Tian, Qingzhang Du and Deqiang Zhang*. Association genetics in Populus reveals the interactions between Pt-miR397a and its target genes. Scientific Reports, 2015, 5: 11672
25. Xiaohui Yang, Zunzheng Wei, Qingzhang Du, Jinhui Chen, Qingshi Wang, Mingyang Quan, Yuepeng Song, Jianbo Xie and Deqiang Zhang*. The genetic regulatory network centered on Pto-Wuschela and its targets involved in wood formation revealed by association studies. Scientific Reports, 2015, 5: 16507
26. Dong Ci, Yuepeng Song, Min Tian and Deqiang Zhang*. Methylation of miRNA genes in the response to temperature stress in Populus simonii. Frontiers in Plant Science, 2015, 6: 921
27. Jinhui Chen, Beibei Chen, and Deqiang Zhang*. Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq. BMC Genomics, 2015, 16:164
28. Jinhui Chen, Mingyang Quan, and Deqiang Zhang*. Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq. Planta, 2015, 241 (1): 125–143
29. Ying Li, Baohua Xu, Qingzhang Du, and Deqiang Zhang*. Association genetics and expression patterns of a CBF4 homolog in Populus under abiotic stress. Molecular Genetics and Genomics, 2015, 290(3): 913–928
30. Qingzhang Du, Lu Wang, Xiaohui Yang, Chenrui Gong, and Deqiang Zhang*. Populus endo-?-1,4-glucanases gene family: genomic organization, phylogenetic analysis, expression profiles and association mapping. Planta, 2015, 241(6): 1417–1434
31. Xiaohui Yang, Qingzhang Du, Jinhui Chen, Bowen Wang, and Deqiang Zhang*. Association mapping in Populus reveals the interaction between Pto-miR530a and its target Pto-KNAT1. Planta, 2015, 242(1): 77–95
32. Mingyang Quan, Jinhui Chen, and Deqiang Zhang*. Exploring the secrets of long noncoding RNAs. International Journal of Molecular Sciences, 2015, 16, 5467–5496
33. Ying Li, Baohua Xu, Qingzhang Du, and Deqiang Zhang*. Transcript abundance patterns of Populus C-REPEAT BINDING FACTOR2 orthologs and genetic association of PsCBF2 allelic variation with physiological and biochemical traits in response to abiotic stress. Planta, 2015, 242(1): 295–312
34. Yuepeng Song, Kaifeng Ma, Dong Ci, Zhiyi Zhang, and Deqiang Zhang*. Biochemical, physiological and gene expression reveals sex-specific differences floral development in Populus tomentosa. Physiologia Plantrum, 2014, 150(1): 18–31
35. Xiaohui Yang, Xinguo Li, Bailian Li, and Deqiang Zhang*. Identification of genes differentially expressed in shoot apical meristems and in mature xylem of Populus tomentosa. Plant Molecular Biology Reporter, 2014, 32(2): 452–464
36. Qingzhang Du, Baohua Xu, Chenrui Gong, Xiaohui Yang, Wei Pan, Jiaxing Tian, Bailian Li, and Deqiang Zhang*. Variation in growth, leaf and wood-property traits of Chinese white poplar (Populus tomentosa Carr.), a major industrial tree species in Northern China. Canadian Journal of Forest Research, 2014, 44(4): 326–339
37. Jiaxing Tian, Qingzhang Du, Bailian Li, and Deqiang Zhang*. Single-nucleotide polymorphisms in the 5'UTR of UDP-glucose dehydrogenase (PtUGDH) associate with wood properties in Populus tomentosa. Tree Genetics & Genomes, 2014, 10(2): 339–354
38. Bowen Wang, Qingzhang Du, Xiaohui Yang, and Deqiang Zhang*. Identification and characterization of nuclear genes involved in photosynthesis in Populus. BMC Plant Biology, 2014, 14:81
39. Yuepeng Song, Qingqing Chen, Dong Ci and Deqiang Zhang*. Effects of high temperature on photosynthesis and related gene expression in poplar. BMC Plant Biology, 2014, 14:111
40. Jiaxing Tian, Mengqi Chang, Qingzhang Du, Baohua Xu, and Deqiang Zhang*. Single-nucleotide polymorphisms in PtoCesA7 and their association with growth and wood properties in Populus tomentosa. Molecular Genetics and Genomics, 2014, 289(3): 439–455
41. Qingzhang Du, Lu Wang, Daling Zhou, Haijiao Yang, Chenrui Gong, Wei Pan, and Deqiang Zhang*. Allelic variation within the S-adenosyl-l-homocysteine hydrolase gene family is associated with wood properties in Chinese white poplar (Populus tomentosa). BMC Genetics, 2014, 15 (Suppl 1):S4
42. Zunzheng Wei, Guanyu Zhang, Qingzhang Du, Jinfeng Zhang, Bailian Li and Deqiang Zhang*. Association mapping for morphological and physiological traits in Populus simonii. BMC Genetics, 2014, 15 (Suppl 1):S3
43. Yuepeng Song, Dong Ci, Min Tian and Deqiang Zhang*. Comparison of the physiological effects and transcriptome responses of Populus simonii under different abiotic stresses. Plant Molecular Biology, 2014, 86(1): 139-156
44. Bowen Wang and Deqiang Zhang*. Association of allelic variation in PtoXET16A with growth and wood properties in Populus tomentosa. International Journal of Molecular Sciences, 2014, 15(9): 16949-16974
45. Baohua Xu, Jiaxing Tian, Qingzhang Du, Chenrui Gong, Wei Pan and Deqiang Zhang*. Single nucleotide polymorphisms in a cellulose synthase gene (PtoCesA3) are associated with growth and wood properties in Populus tomentosa. Planta, 2014, 240(6): 1269–1286
46. Xiaohui Yang, Xinguo Li, Bailian Li, and Deqiang Zhang*. Genome-wide transcriptional profiling reveals molecular signatures of secondary xylem differentiation in Populus tomentosa. Genetics and Molecular Research, 2014, 3 (4): 9489-9504
47. Qingzhang Du, Wei Pan, Baohua Xu, Bailian Li, and Deqiang Zhang*. Polymorphic simple sequence repeat (SSR) loci within cellulose synthase (PtoCesA) genes are associated with growth and wood properties in Populus tomentosa. New Phytologist, 2013, 197(3): 763–776
48. Qingzhang Du, Chenrui Gong, Wei Pan, and Deqiang Zhang*. Development and application of microsatellites in candidate genes involved in wood formation in the Chinese white poplar (Populus tomentosa Carr.). DNA Research, 2013, 20(1): 31–44
49. Kaifeng Ma, Yuepeng Song, Zhen Huang, Liyuan Lin, Zhiyi Zhang, and Deqiang Zhang*. The low fertility of Chinese white poplar: dynamic changes in anatomical structure, endogenous hormone concentrations, and key gene expression in the reproduction of a naturally occurring hybrid. Plant Cell Reports, 2013, 32(3): 401–414
50. Qingzhang Du, Wei Pan, Jiaxing Tian, Bailian Li, and Deqiang Zhang*. The UDP-glucuronate decarboxylase gene family in Populus: structure, expression, and association genetics. PLoS One, 2013, 8(4): e60880
51. Zunzheng Wei, Qingzhang Du, Jinfeng Zhang, Bailian Li, and Deqiang Zhang*. Genetic diversity and population structure in Chinese indigenous poplar (Populus simonii) populations using microsatellite markers. Plant Molecular Biology Reporter, 2013, 31(3): 620–632
52. Jinhui Chen, Yuepeng Song, He Zhang, and Deqiang Zhang*. Genome-wide analysis of gene expression in response to drought stress in Populus simonii. Plant Molecular Biology Reporter, 2013, 31(4): 946–962
53. Yuepeng Song, Kaifeng Ma, Dong Ci, Zhiyi Zhang, and Deqiang Zhang*. Sexual dimorphism floral microRNA profiling and target gene expression in andromonoecious poplar (Populus tomentosa). PLoS One, 2013, 8(5): e62681
54. Yuepeng Song, Kaifeng Ma, Dong Ci, Xueyuan Tian, Zhiyi Zhang, and Deqiang Zhang*. The SUPERMAN gene family in Populus: nucleotide diversity and gene expression in a dioecious plant. Plant Cell Reports, 2013, 32(8): 1277–1288
55. Kaifeng Ma, Yuepeng Song, Xiaohui Yang, and Deqiang Zhang*. Variation in genomic methylation in natural populations of Chinese white poplar. PLoS One, 2013, 8(5): e63977
56. Yuepeng Song, Qingqing Chen, Dong Ci, and Deqiang Zhang*. Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii. Plant Cell Reports, 2013, 32(9):1407–1425
57. Yuepeng Song, Kaifeng Ma, Dong Ci, Jiaxing Tian, Qingqing Chen, Bowen Wang, Zhiyi Zhang, and Deqiang Zhang*. Sexual dimorphic floral development in dioecious plants revealed by transcriptome, phytohormone, and DNA methylation analysis in Populus tomentosa. Plant Molecular Biology, 2013, 83(6):559–576
58. Qingzhang Du, Baohua Xu, Wei Pan, Chenrui Gong, Qingshi Wang, Jiaxing Tian, Bailian Li, and Deqiang Zhang*. Allelic variation in a cellulose synthase gene (PtoCesA4) associated with growth and wood properties in Populus tomentosa. G3: Genes, Genomes, Genetics, 2013, 3(11): 2069–2084
59. Jiaxing Tian, Qingzhang Du, Mengqi Chang, and Deqiang Zhang*. Allelic variation in PtGA20Ox associates with growth and wood properties in Populus spp. PLoS One, 2012, 7(12): e53116
60. Qingzhang Du, Deqiang Zhang*, and Bailian Li. Development of 15 novel microsatellite markers from cellulose synthase genes in Populus tomentosa (Salicaceae). American Journal of Botany, 2012, 99(2): e46–e48
61. Yuepeng Song, Kaifeng Ma, Wenhao Bo, Zhiyi Zhang, and Deqiang Zhang*. Sex-specific DNA methylation and gene expression in andromonoecious poplar. Plant Cell Reports, 2012, 31(8): 1393–1405
62. Kaifeng Ma, Yuepeng Song, Xibing Jiang, Zhiyi Zhang, Bailian Li, and Deqiang Zhang*. Photosynthetic response to genome methylation affects the growth of Chinese white poplar. Tree Genetics & Genomes, 2012, 8(6): 1407–1421
63. Yuepeng Song, Zeliang Wang, Wenhao Bo, Yuanyuan Ren, Zhiyi Zhang, and Deqiang Zhang*. Transcriptional profiling by cDNA-AFLP analysis showed differential transcript abundance in response to water stress in Populus hopeiensis. BMC Genomics, 2012, 13: 286
64. Qingzhang Du, Bowen Wang, Zunzheng Wei，Deqiang Zhang*, and Bailian Li. Genetic diversity and population structure of Chinese white poplar (Populus tomentosa) revealed by SSR markers. Journal of Heredity, 2012, 103 (6): 853–862
65. Lu Wang, Baolei Wang, Zunzheng Wei, Qingzhang Du, Deqiang Zhang*, and Bailian Li. Development of 35 microsatellite markers from heat stress transcription factors in Populus simonii (Salicaceae). American Journal of Botany, 2012, 99(9): e357–e361
66. Deqiang Zhang*, Baohua Xu, Xiaohui Yang, Zhiyi Zhang and Bailian Li. The sucrose synthase gene family in Populus: structure, expression, and evolution. Tree Genetics & Genomes, 2011, 7(3): 443–451
67. Deqiang Zhang*, Qingzhang Du, Baohua Xu, Zhiyi Zhang and Bailian Li. The actin multigene family in Populus: organization, expression and phylogenetic analysis. Molecular Genetics and Genomics, 2010, 284(2): 105–119
68. Deqiang Zhang*, Xiaohui Yang, Zhiyi Zhang and Bailian Li. Expression and nucleotide diversity of the poplar COBL gene. Tree Genetics & Genomes, 2010, 6(2): 331-344
69. Mingquan Ding, Peichen Hou, Xin Shen, Meijuan Wang, Shurong Deng, Jian Sun, Fei Xiao, Ruigang Wang, Xiaoyang Zhou, Cunfu Lu, Deqiang Zhang, Xiaojiang Zheng, ZanminHu, Shaoliang Chen. Salt-induced expression of genes related to Na+ /K+ and ROS homeostasis in leaves of salt-resistant and salt-sensitive poplar species. Plant Mol Biol, 2010, 73(3): 251-269
70. Bala R Thumma, Bronwyn A Matheson, Deqiang Zhang, Christian Meeske, Roger Meder, Geoff M Downes and Simon G. Southerton. Identification of a cis-acting regulatory polymorphism in a eucalypt cobra-like gene affecting cellulose content. Genetics, 2009, 183(3): 1153-1164
71. Deqiang Zhang, Zhiyi Zhang and Kai Yang. Identification of AFLP markers associated with embryonic root development in Populus tomentosa. Silvae Genetica, 2007, 56(1): 27-32
72. Juan Du, Hongli Xie, Deqiang Zhang, Xinqiang He, Minjie Wang, Yingzhang Li, Keming Cui and Mengzhu Lu. Regeneration of secondary vascular system in poplar (Populus tomentosa Carr.) as a novel system to investigate gene expression by a proteomic approach. Proteomics, 2006, 6(3): 881-895
73. Deqiang Zhang, Zhiyi Zhang and Kai Yang. QTL analysis of growth and wood chemical content traits in an interspecific backcross family of white poplar (Populus tomentosa × P. bolleana) × P. tomentosa. Canadian Journal of Forest Research, 2006, 36(8): 2015-2023
74. Deqiang Zhang*, Zhiyi Zhang, Kai Yang and Bailian Li. Genetic mapping in (Populus tomentosa×P. bolleana) and P. tomentosa Carr. using AFLP markers. Theoretical and Applied Genetics, 2004, 108 (4): 657-662)
专著与教材：
张德强，张志毅著。毛白杨遗传作图与QTL分析。2012，中国环境科学出版社.北京
张志毅，张金凤，张德强。林木遗传学基础。2012，中国林业出版社.北京
张德强。林业生物技术，第9章 林木分子标记辅助育种技术307-343。2010，中国科学出版社.北京
Qingzhang Du, Baohua Xu, Deqiang Zhang*, Bailian Li. Advances in Environmental Research. Volume 25，Construction of a Core Collection of Populus Tomentosa Based on SSR Markers in China. pp. 151-169 Pub. Date: 2012 2nd Quarter，ISBN: 978-1-61942-556-9
Yuepeng Song and Deqiang Zhang. Chapter 3：The role of long noncoding RNAs in plant stress tolerance, Book: Plant Stress Tolerance: Methods and Protocols, Second Edition, 2017
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