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Xi, R., Lin, N., and Chen, Y. (2009). Compression and Aggregation for Logistic Regression Analysis in Data Cubes, IEEE Transactions on Knowledge and Data Engineering, 21(4), 479- 492.
Lin, N. and Xi, R. (2010). Fast Surrogates of U-statistics, Computational Statistics and Data Analysis, 54, 16-24.
Li, Q., Xi, R. and Lin, N. (2010). Bayesian Regularized Quantile Regression, Bayesian Analysis 5, 533-556.
Kim, T.M., Luquette, L.J., Xi, R. and Park, P. J. (2010) rSW-seq: Algorithm for Detection of Copy Number Alterations in Deep Sequencing Data, BMC Bioinformatics 11:423.
Xi, R., Kim, T. M. and Park, P.J. (2010) Detecting Structural Variation Using Next-generation Sequencing, Briefings in Functional Genomics, 9(5-6):405-15.
Lin, N. and Xi, R. (2010). Aggregated Estimating Equation Estimation, Statistics and Its Interface 4:73-84.
Kharchenko, P.V., Alekseyenko, A.A., Schwartz, Y.B., Minoda, A., Riddle, N.C., Ernst, J., Sabo, P.J., Larschan, E., Gorchakov, A.A., Gu, T., Linder-Basso, D., Plachetka, A., Shanower,G., Tolstorukov, M.Y., Luquette, L.J., Xi, R., Jung, Y.L., Park, R.W., Bishop, E.P., Canfield, T.P., Sandstrom, R., Thurman, R.E., MacAlpine, D.M., Stamatoyannopoulos, J.A., Kellis, M., Elgin, S.C.R., Kuroda, M.I., Pirrotta, V., Karpen, G.H. and Park, P.(2011). Comprehensive analysis of the chromatin landscape in Drosophila melanogaster, Nature 471(7339):480-5.
Kharchenko, P.V., Xi, R.,and Park, P. (2011). Evidence for dosage compensation between the X and autosomes in mammals, Nature Genetics, ;43(12):1167-9.
Xi, R., Hadjipanayis, A.G., Luquette, L.J., Kim, T.M., Lee, E., Zhang, J.H., Johnson, M.D., Muzny, D.M., Wheeler, D.A., Kucherlapati, R., and Park, P. (2011). Copy number alteration detection in sequencing data using the Bayesian information criterion, Proceedings of the National Academy of Sciences, USA, 108(46):E1128-36.
Xi, R., Lin, N., Chen, Y. and Kim (2012), Y. Compression and Aggregation of Bayesian Estimates for Data Intensive Computing; Knowledge and Information Systems Knowledge and Information Systems, Online First (doi:10.1007/s10115-011-0459-4).
The Cancer Genome Atlas Research Network (Including Xi, R.) (2012). Comprehensive molecular characterization of human colon and rectal tumors Nature, 487:330-337,