个人简介
个人简介
西安电子科技大学计算机学院教授、博士生导师。先后于西北大学获数学学士学位，西安电子科技大学分别获计算机软件与理论及信号与信息处理硕士和博士学位。受到JeffreyS.Vitter教授邀请，曾在堪萨斯大学工作一年。大数据算法理论与应用（LabofAlgorithmTheoriesandApplicationsforBigData,ATA）实验室主任。在IEEETransactionsonKnowledgeandDataEngineering(TKDE)，IEEE/ACMTransactionsonComputationalBiologyandBioinformatics(TCBB),Knowledge-BasedSystems(KNOSYS)和IEEEDataCompressionConference(DCC),ACM-SIAMAlgorithmEngineeringandExperiments(ALENEX),StringProcessingandInformationRetrieval(SPIRE)等国内外重要刊物和会议发表学术论文100余篇。
2012年邀请JeffreyS.Vitter教授访问西电（http://oice.xidian.edu.cn/info/1010/1897.htm）
（https://meeting.xidian.edu.cn/html/news/201301/202.html）
Recentpublications:
1.X.Chen,H.Huo,J.Huan,J.S.Vitter,W.Zheng,andL.Zou,MSQ-Index:ASuccinctIndexforFastGraphSimilaritySearch,IEEETransactionsonKnowledgeandDataEngineering(TKDE),November2019,DOI:10.1109/TKDE.2019.2954527.CCFA类刊物
2.X.Chen,H.Huo,J.Huan,andJ.S.Vitter,Anefficientalgorithmforgrapheditdistancecomputation,Knowledge-BasedSystems(KBS),163(2019):762–775,2019.中科院一区
3.H.Huo,X.Chen,X.Guo,J.S.Vitter,EfficientcompressionandindexingforhighlyrepetitiveDNAsequencecollections,IEEE/ACMTransactionsonComputationalBiologyandBioinformatics(TCBB),January2020,DOI:10.1109/TCBB.2020.2968323.CCFB类刊物
4.Z.Sun,H.Huo,J.Huan,andJ.S.Vitter,FeatureReductionBasedonSemanticSimilarityforGraphClassification,Neurocomputing,February2020,DOI:10.1016/j.neucom.2020.02.047.中科院二区
5.H.Huo,X.Chen,Y.Zhao,X.Zhu,andJ.S.Vitter,PracticalSuccinctTextIndexesinExternalMemory,IEEEDataCompressionConference(DCC),Snowbird,USA,2018.CCFB类会议
6.Z.Li,J.LiandH.Huo,OptimalIn-PlaceSuffixSorting,Proceedingsofthe25thInternationalSymposiumonStringProcessingandInformationRetrieval(SPIRE),Lima,Peru,2018.
7.H.Huo,Z.Sun,S.Li,J.S.Vitter,etal.,CS2A:acompressedsuffixarray-basedmethodforshortreadalignment,IEEEDataCompressionConference(DCC),Snowbird,USA,2016.CCFB类会议
8.H.Huo,L.Chen,H.Zhao,J.S.Vitter,etal.,AData-AwareFM-index,ACM-SIAMProceedingsofthe17thMeetingonAlgorithmEngineeringandExperiments(ALENEX),SanDiego,California,USA,2015.
9.H.Huo,L.Chen,J.S.Vitter,andY.Nekrich,APracticalImplementationofCompressedSuffixArrayswithApplicationstoSelf-indexing,IEEEDataCompressionConference(DCC),Snowbird,USA,2014.CCFB类会议
Software:
实验室开发的软件可在GitHub上访问（压缩索引与检索、数据压缩、外存压缩索引，基因组压缩与模式搜索，图数据库压缩索引与相似性搜索）
学生去向：中科院、高校、研究所、百度、腾讯、阿里、华为、中兴、三星、美团、SPSS、IBM、Intel、创建软件公司等。
科学研究
主持的部分科研项目：
1．大规模图数据库的压缩索引与搜索算法研究，国家自然科学基金
2．大规模序列数据集的压缩索引与搜索算法研究，国家自然科学基金
课程教学
本人承担的教学任务：
1.算法设计与分析
2.并行与分布式计算
3.生物信息学算法
4.数据结构
关于研究生招生的信息：
欢迎对我们研究方向感兴趣的同学报考！
实验室接收有推免资格、优研计划的研究生。
本实验室（在西安电子科技大学计算机学院下）现希望招聘青年教师，请有相关研究基础且感兴趣我们研究方向的近期毕业的国内外博士生，博士后联系我
本实验室已毕业学生去向：中科院、高校、研究所、百度、腾讯、阿里、华为、中兴、三星、美团、SPSS、IBM、创建软件公司等。
近期论文
查看导师新发文章
（温馨提示：请注意重名现象，建议点开原文通过作者单位确认）
近期发表论文
2020
JournalPapers
1.HongweiHuo,XiaoyangChen,XuGuo,JeffreyScottVitter,EfficientcompressionandindexingforhighlyrepetitiveDNAsequencecollections,IEEE/ACMTransactionsonComputationalBiologyandBioinformatics(TCBB),21January,2020.
2.ZhigangSun,HongweiHuo,JunHuan,andJeffreyScottVitter,FeatureReductionBasedonSemanticSimilarityforGraphClassification,Neurocomputing,toappear.
2019
JournalPapers
1.XiaoyangChen,HongweiHuo,JunHuan,andJeffreyS.Vitter,MSQ-Index:ASuccinctIndexforFastGraphSimilaritySearch,20November,2019.
2.XiaoyangChen,HongweiHuo,JunHuan,andJeffreyS.Vitter,Anefficientalgorithmforgrapheditdistancecomputation,Knowledge-BasedSystems,163(2019):762–775,2019.
2018
JournalPapers
1.XiaoyangChen,HongweiHuo,JunHuan,andJeffreyS.Vitter,MSQ-Index:ASuccinctIndexforFastGraphSimilaritySearch,arxiv.org/abs/1612.09155.
2.XiaoyangChen,HongweiHuo,JunHuan,andJeffreyS.Vitter,Anefficientalgorithmforgrapheditdistancecomputation,Knowledge-BasedSystems,163(2019):762–775,2018,https://doi.org/10.1016/j.knosys.2018.10.002.
3.ZhizeLi,JianLiandHongweiHuo,OptimalIn-PlaceSuffixSorting,arxiv.org/abs/1610.08305.
4.QiangYu,DingbangWei,HongweiHuo,SamSelect:asamplesequenceselectionalgorithmforquorumplantedmotifsearchonlargeDNAdatasets,BMCBioinformatics,2018,19:228.
5.ZhigangSun,HongweiHuo,andXiaoyangChen,FastTop-kGraphSimilaritySearchviaRepresentativeMatrices,IEEEAccess,6(3):21408-21417,2018.
ConferencePapers
1.HongweiHuo,XiaoyangChen,YuhaoZhao,XiaojinZhu,andJeffreyS.Vitter,PracticalSuccinctTextIndexesinExternalMemory,ProceedingsoftheIEEEDataCompressionConference(DCC),Snowbird,USA,March27-March30,2018.
2.ZhizeLi,JianLiandHongweiHuo,OptimalIn-PlaceSuffixSorting,Proceedingsofthe25thInternationalSymposiumonStringProcessingandInformationRetrieval(SPIRE),Lima,Peru,October9th–11th,2018.
3.ZhizeLi,JianLiandHongweiHuo,OptimalIn-PlaceSuffixSorting,ProceedingsofDataCompressionConference(DCC),Snowbird,USA,March27-March30,2018,422.Poster.
2017
JournalPapers
1.XiaoyangChen,HongweiHuo,JunHuan,JeffreyS.Vitter,EfficientGraphSimilaritySearchinExternalMemory,IEEEAccess,5(1):4551-4560,2017.
2.HaitaoGuoandHongweiHuo,ANewAlgorithmforIdentifyingCis-regulatoryModulesBasedonHiddenMarkovModel,BioMedResearchInternational,Volume2017(2017),ArticleID6274513,12pages.
2016
JournalPapers
1.QiangYu,HongweiHuo,RuixingZhao,DazhengFeng,JeffreyS.VitterandJunHuan,RefSelect:areferencesequenceselectionalgorithmforplanted(l,d)motifsearch,BMCBioinformatics,17(Suppl9):266,2016.
2.QiangYu,HongweiHuoandDazhengFeng,PairMotifChIP:AFastAlgorithmforDiscoveryofPatternsConservedinLargeChIP-seqDataSets,BioMedResearchInternational,Volume2016,ArticleID4986707,10pages.
3.霍红卫，陈晓阳，陈龙刚，于强，高阶熵压缩的全文自索引，计算机学报，39(12):2494–2511,2016.
4.郭海涛,霍红卫,于强,SegHMC:一种基于segmentalHMM模型的顺式调控模块识别算法，自动化学报,42(11):1718–1731，2016.
ConferencePapers
1.HongweiHuo,ZhigangSun,ShuangjiangLi,JeffreyS.Vitter,XinkunWang,QiangYuandJunHuan,CS2A:acompressedsuffixarray-basedmethodforshortreadalignment,ProceedingsoftheIEEEDataCompressionConference(DCC),Snowbird,USA,March29-April1,2016.271–278.
2015
JournalPapers
1.QiangYu,HongweiHuo,JeffreyS.Vitter,JunHuanandYakovNekrich,AnEfficientExactAlgorithmfortheMotifStemSearchProblemoverLargeAlphabets,IEEE/ACMTransactionsonComputationalBiologyandBioinformatics(TCBB),12(2):384–397,March/April2015.
2.QiangYu,HongweiHuo,XiaoyangChen,HaitaoGuo,JeffreyS.Vitter,andJunHuan,AnEfficientAlgorithmforDiscoveringMotifsinLargeDNADataSets,IEEETransactionsonNanoBioScience,14(5):535–544,2015.
ConferencePapers
1.HongweiHuo,LonggangChen,HengZhao,JeffreyS.Vitter,YakovNekrich,andQiangYu.AData-AwareFM-index.ACM-SIAMProceedingsofthe17thMeetingonAlgorithmEngineeringandExperiments(ALENEX),SanDiego,California,USA,2015
2014
ConferencePapers
1.HongweiHuo,LonggangChen,JeffreyS.Vitter,andYakovNekrich,APracticalImplementationofCompressedSuffixArrayswithApplicationstoSelf-indexing,DataCompressionConference(DCC),Snowbird,USA,2014,292–301.http://www.ittc.ku.edu/~jsv/Papers/HCV13.PracticalCSAImplementation.pdf
2.QiangYu,HongweiHuo,XiaoyangChen,HaitaoGuo,JeffreyS.Vitter,andJunHuan,AnEfficientMotifFindingAlgorithmforLargeDNADataSets,IEEEInternationalConferenceonBioinformaticsandBiomedicine(BIBM),Belfast,UK,2014.StudentTravelAward.
2013
JournalPapers
1.Q.Yu,H.Huo,Y.Zhang,H.Guo,andH.Guo,PairMotif+:AFastandEffectiveAlgorithmforDeNovoMotifDiscoveryinDNAsequences,InternationalJournalofBiologicalSciences,9(4):412-424,2013.
2.YipuZhang,HongweiHuo,QiangYu,AHeuristicCluster-basedEMAlgorithmforthePlanted(l,d)Problem,JournalofBioinformaticsandComputationalBiology,11(4):1350009(19pages),2013.
3.张懿璞,霍红卫,于强,郭鸿志,用于转录因子结合位点识别的定位投影求精算法,计算机学报,Vol.36,No.12,pp.2545–2559,2013.
ConferencePapers
1.Q.Yu,H.Huo,J.S.Vitter,J.HuanandY.Nekrich,StemFinder:AnEfficientAlgorithmforSearchingMotifStemsoverLargeAlphabets,IEEEInternationalConferenceonBioinformaticsandBiomedicine(BIBM),Shanghai,pages473-476,2013.
2012
JournalPapers
1.YuQ,HuoH,ZhangY,andGuoH,PairMotif:ANewPattern-drivenAlgorithmforPlanted(l,d)DNAMotifSearch,PLoSONE,7(10):e48442,2012.
2.霍红卫,郭丹丹,于强等,(l,d)-模体识别问题的遗传优化算法，计算机学报,Vol.35,No.7,pp.1429–1439,2012.
ConferencePapers
1.H.Huo,S.Lin,Q.Yu,Y.Zhang,andV.Stojkovic,AMapReduce-basedAlgorithmforMotifSearch,2012IEEE26thInternationalParallelandDistributedProcessingSymposiumWorkshops(IPDPSW),Shanghai,pages2052-2060,2012.
2010
JournalPapers
1.HongweiHuo,ZhenhuaZhao,V.Stojkovic,OptimizingGeneticAlgorithmforMotifDiscovery,MathematicalandComputerModelling,52(11–12):2011-2020,2010.
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