何舜平 - 中国科学院水生生物研究所 -

个人简介

1962年12月2日出生，法国国家自然历史博物馆理学博士，中国科学院水生生物标本馆馆长、中国科学院水生生物多样性与保护重点实验室主任、鱼类系统发育与生物地理学学科组责任研究员。中国动物学会理事，湖北省暨武汉动物学会理事长。湖北省科协第六届委员；任《中国动物志》编委，以及《生物多样性》，《动物学研究》，《应用与环境生物学报》和《水生生物学报》编委。先后主持和承担欧盟项目、国家自然科学重点基金、国家自然科学青年基金、国家863项目和973专题。得到美国NSF有关生命之树项目的资助开展鲤形目系统发育研究。研究工作运用了生物技术、网络和数字化技术相结合的手段，使鱼类系统学和生物地理学这一进化生物学的前沿学科达到了较高的水平。使用多个基因序列数据重建鲤科和鲇形目鱼类的系统(Zhao, Duan et al. 2009; Fu, Chen et al. 2010; Chen, Zou et al. 2011; Fu and He 2012; Zou, Guo et al. 2012; Yang, Zou et al. 2013; Yang and He 2014)发育过程、提出了鲤科鱼类系统发育新的模式，保持了对鲤形目鱼类系统学研究在世界上的主导地位

研究领域

鱼类生物地理学；鱼类比较基因组学；生物信息学；鱼类系统发育

近期论文

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Yang, L. and S. He (2014). "A bioinformatics-based update on microRNAs and their targets in rainbow trout (Oncorhynchus mykiss)." Gene 533(1): 261-269. Yang, L., M. Zou, et al. (2013). "Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish." Bmc Genomics 14. Tao, W., R. L. Mayden, et al. (2013). "Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses." Molecular Phylogenetics and Evolution 66(3): 603-616. Tao, W., J. Yuan, et al. (2013). "Characterization of Gonadal Transcriptomes from Nile Tilapia (Oreochromis niloticus) Reveals Differentially Expressed Genes." Plos One 8(5). Zou, M., B. Guo, et al. (2012). "Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)." Sci Rep 2. Fu, B. and S. He (2012). "Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing." DNA Research 19(2): 131-142. Chen, M., M. Zou, et al. (2011). "Evolutionary Patterns of RNA-Based Duplication in Non-Mammalian Chordates." Plos One 6(7). Fu, B., M. Chen, et al. (2010). "The rapid generation of chimerical genes expanding protein diversity in zebrafish." Bmc Genomics 11. Zhao, K., Z. Y. Duan, et al. (2009). "The youngest split in sympatric schizothoracine fish (Cyprinidae) is shaped by ecological adaptations in a Tibetan Plateau glacier lake." Mol Ecol 18(17): 3616-3628. Guo, B.C., Tong, C.B., He, S.P., 2009. Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative. Gene 439, 102-112. Li, Z., He, S., 2009. Relaxed purifying selection of rhodopsin gene within a Chinese endemic cavefish genus Sinocyclocheilus (Pisces: Cypriniformes). Hydrobiologia 624, 139-149. Tong, C.B., Guo, B.C., He, S.P., 2009. Bead-probe complex capture a couple of SINE and LINE family from genomes of two closely related species of East Asian cyprinid directly using magnetic separation. BMC Genomics 10, -. Duan, Z., Zhao, K., Peng, Z., Li, J., Diogo, R., He, S., Zhao, X., 2009. Comparative phylogeography of the Yellow River schizothoracine fishes (Cyprinidae): Vicariance, expansion, and recent coalescence in response to the Quaternary environmental upheaval in the Tibetan Plateau. Mol Phylogenet Evol. Guo, B., Li, J., Tong, C., He, S., 2008. Cloning and sequence analysis of Sox genes in a tetraploid cyprinid fish, Tor douronensis. Chin Sci Bull 53, 1988-1995. He, S., Gu, X., Mayden, R.L., Chen, W.-J., Conway, K.W., Chen, Y., 2008b. Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome. Mol Phylogenet Evol 47, 419-425. He, S., Mayden, R.L., Wang, X., Wang, W., Tang, K.L., Chen, W.-J., Chen, Y., 2008c. Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: Further evidence from a nuclear gene of the systematic chaos in the family. Mol Phylogenet Evol 46, 818-829. Kong, X., Wang, X., Gan, X., Li, J., He, S., 2008. Molecular evolution of connective tissue growth factor in Cyprinidae (Teleostei : Cypriniformes). Progr Nat Sci 18, 155-160. Li, J., Wang, X., Kong, X., Zhao, K., He, S., Mayden, R.L., 2008. Variation patterns of the mitochondrial 16S rRNA gene with secondary structure constraints and their application to phylogeny of cyprinine fishes (Teleostei: Cypriniformes). Mol Phylogenet Evol 47, 472-487. Li, Z., Guo, B., Li, J., He, S., Chen, Y., 2008. Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae : Sinocyclocheilus). Chin Sci Bull 53, 2342-2352. Mayden, R.L., Tang, K.L., Wood, R.M., Chen, W.-J., Agnew, M.K., Conway, K.W., Yang, L., Simons, A.M., Bart, H.L., Harris, P.M., Li, J., Wang, X., Saitoh, K., He, S., Liu, H., Chen, Y., Nishida, M., Miya, M., 2008. Inferring the Tree of Life of the order Cypriniformes, the earth's most diverse clade of freshwater fishes: Implications of varied taxon and character sampling. J Syst Evol 46, 424-438.