章成君 - 中国科学院大学

个人简介

招生专业生物化学与分子生物学招生方向生物信息学基因组学基因组育种植物新品种教育经历 2016-01--云南大学 EMBA 2005-09--2011-06 华中农业大学博士研究生 2003-03--2006-07 武汉大学双学位 2001-09--2005-06 华中农业大学理学学士工作经历 2011.09-2014.08 芝加哥大学博士后 2014.08-至今中国科学院昆明植物研究所研究员 2017.09-至今中国科学院昆明植物研究所海盐工程技术中心常务副主任教授课程生物信息学实践生物信息学出版信息

研究领域

◎ 植物基因组演化及新基因起源研究 ◎ 选择性剪切研究 ◎ 种子转录组学研究 ◎ 基因组育种技术研究及植物新品种研究

近期论文

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Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L# (2008) Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene 412:59-70. Nuruzzaman M, Gupta M, Zhang C, Wang L, Xie W, Xiong L, Zhang Q and Lian X# (2008) Sequence and expression analysis of the thioredoxin protein gene family in rice. MGG 280:139-151. Gupta M, Qiu X, Wang L, Xie W, Zhang C, Xiong L, Lian X, Zhang Q# (2008) KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa). MGG 280:437-52. Xie W, Chen Y, Zhou G, Wang L, Zhang C, Zhang J, Xiao J, Zhu T, Zhang Q# (2009) Single feature polymorphisms between two rice cultivars detected using a median polish method. Theor Appl Genet 119:151-164. Xia J#, Hu X, Shi F, Niu X and Zhang C (2010) Support vector machine method on predicting resistance gene against Xanthomonas oryzae pv. oryzae in rice. Expert Systems with Applications 37:5946-5950. Du H, Ouyang Y, Zhang C, Zhang Q# (2011) Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives, New Phytologist, 2011, 191:275-287. Zhang C, Wang J, Xie W, Zhou , Long M , Zhang Q# (2011) Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method, Proc Natl Acad Sci USA, 2011, 108(19):7860-7865. Hu Y, Liu D, Zhong X, Zhang C, Zhang Q, Zhou DX# (2012) CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome, Proc Natl Acad Sci USA, 109(15): 5773-5778. Zhou G, Chen Y, Yao W, Zhang C, Xie W, Hua J, Xing Y, Xiao J, and Zhang Q# (2012) Genetic composition of yield heterosis in an elite rice hybrid, Proc Natl Acad Sci USA, 109(39):15847-15852. Zhang C*, Wang J*, Long M, Fan C# (2013) gKaKs: The pipeline for genome level Ka/Ks calculation, Bioinformatics, 29(5):645-646. Yan W, Liu H, Zhou X, Li Q, Zhang J, Lu L, Liu T, Liu H, Zhang C, Zhang Z, Shen G, Yao W, Chen H, Yu S, Xie W, Xing Y# (2013) Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice, Cell Research, doi: 10.1038/cr.2013.43 Zhang C*, Wang J*, Marowsky NC, Long M, Rod AW#, Fan C# (2013) High Occurrence of Functional New Chimeric Genes in Survey of Rice Chromosome 3 Short Arm Genome Sequences, Genome Biology and Evolution, 5(5):1038-1048. Zhang C, Gschwend RA, Ouyang Y, Long M# (2014) Evolution of gene structural complexity: An alternative-splicing based model accounts for intron-containing retrogenes, Plant Physiology, 165(1):412-423. Zhang C#, Yang H, Yang H (2015) Evolutionary Character of Alternative Splicing in Plants, Bioinformatics and Biology Insights, 9(S1):1-6. Ouyang Y#, Li G, Mi J, Xu C, Du H, Zhang C, Xie W, Li X, Xiao J, Song H, Zhang Q (2016) Origination and Establishment of a Trigenic Reproductive Isolation System in Rice, Molecular Plant, 9:1542-1545. 杜丽思，章成君，张靖，彭晟，杨静，刘林，李成云，杜云龙#（2016）两种生态型玛咖叶片的丛生芽诱导，云南农业科技，10.3969/j.issn.1000-0488.2016.02.001 Zhu Y, Chen L, Zhang C, Hao P, Jing X, Li X (2017) Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii, BMC genomics, 18(1):1042. Zhang L*, Xu P*, Cai Y*, Ma L* et al., Zhang C, Gao Q, Wang J# (2017) The draft genome assembly of Rhododendron delavayi Franch. var. delavayi, GigaScience, 6:1-11. Chen J, Ni P, Li X, Han J, Jackovlic I, Zhang C and Zhao S# (2018) Population size may shape the accumulation of functional mutations following domestication, BMC Evolutionary Biology, 18(4). Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K et al., Long M, Ware D, Wing RA# (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza, Nature Genetics, 50:285-296. Li Y, Fang C, Fu Y et al., Zhang C, Li C# (2018) A survey of transcriptome complexity in Sus scrofa using single-molecule long-read sequencing, DNA Research, 25(4) 421-437. Shi Y*, Su Z*, Yang H* et al., Xue R#, Zhang C# (2019) Alternative splicing coupled to nonsense-mediated mRNA decay contributes to the high-altitude adaptation of maca (Lepidium meyenii), Gene, 694:7-18. Shi Y, Yan X, Yin H et al., Zhang C#, Ma X# (2019) Divergence and hybridization in the desert plant Reaumuria soongarica, Journal of Systematics and Evolution, doi: 10.1111/jse.12490.