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1. Cui W-H, Zhong M-C, Du X-Y, Qu X-J, Jiang X-D, Sun Y-B, Wang D, Chen S-Y, Hu J-Y #. The complete chloroplast genome sequence of a rambler rose, Rosa wichuraiana (Rosaceae). Mitochondrial DNA Part B, 2020, 5:252-253. http://dx.doi.org/10.1080/23802359.2019.1700198.
2. Guo Z-H*, Ma P-F*, Yang G-Q*, Hu J-Y*, Liu Y-L*, Xia E-H, Zhong M-C, Zhao L, Sun G-L, Xu Y-X, Zhao Y-J, Zhang Y-C, Zhang Y-X, Zhang X-M, Zhou M-Y, Guo Y, Guo C, Liu J-X, Ye X-Y, Chen Y-M, Yang Y, Han B, Lin C-S#, Lu Y#, Li D-Z# (*co-first authors; # co-corresponding authors). Genome sequences provide insights into the reticulate origin and unique traits of woody bamboos. Molecular Plant, 2019, 12:1353-1365. https://doi.org/10.1016/j.molp.2019.05.009.
3. Li S*, Yang G*, Yang S*, Just J, Yan H, Zhou N, Jian H, Wang Q, Chen M, Qiu X, Zhang H, Dong X, Jiang X, Sun Y, Zhong M, Bendahmane M, Ning G, Ge H#, Hu J-Y#, Tang K# (*co-first authors; # co-corresponding authors). The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose. Scientific Reports, 2019, 9:5985. DOI: 10.1038/s41598-019-42428-y.
4. Li S*, Qu X*, Zhong M, Jiang X, Dong X, Yi T, Tang K, Dai S#, Hu J-Y#. Characterization of the complete chloroplast genome of Rosa chinensis ‘Old Blush’ (Rosacaeae), an important cultivated Chinese rose. Acta Horticultruae, 2019, 1232:119-124. DOI: 10.17660/ActaHortic.2019.1232.19.
5. Li P, Yang H, Wang L, Liu H, Huo A, Zhang C, Liu A, Zhu A, Hu J-Y, Lin Y, Liu L. Physiological and transcriptome analyses reveal short-term responses and formation of memory under drought stress in rice. Front. Genet. 2019. 10. doi: 10.3389/fgene.2019.00055.
6. Li S*, Zhong M*, Dong X*, Jiang X, Xu Y, Sun Y, Cheng F, Li D-Z, Tang K, Wang S#, Dai S#, Hu J-Y# (*co-first authors; # co-corresponding authors). Comparative transcriptomics identifies patterns of selection in roses. BMC Plant Biology, 2018, 18:371. https://doi.org/10.1186/s12870-018-1585-x.
7. Guan Y, Liu L, Wang Q, Zhao J, Li P, Hu J-Y, Yang Z, Running MP, Sun H, Huang, J. Gene refashioning through innovative shifting of reading frames in mosses. Nature Communications, 2018, 9:1555. DOI:10.1038/s41467-018-04025-x.
8. Hu J-Y*,#, Lei L*, de Meaux J# (*co-first authors; # co-corresponding authors). Temporal fitness fluctuations in experimental Arabidopsis thaliana populations. PLOS ONE, 2017, 12(6): e0178990. https://doi.org/10.1371/journal.pone.0178990.
9. Dong X, Jiang X, Kuang G, Wang Q, Zhong M, Jin D, Hu J-Y#. Genetic control of flowering time in woody plants: roses as an emerging model. Plant Diversity, 2017, 39: 104-110. doi: 10.1016/j.pld.2017.01.004.
10. Hu J-Y*#, Zhou Y, He F, Liu L-Y, Turck F, Coupland G, de Meaux J# (*co-first authors; # co-corresponding author). MiR824-modulated AGAMOUS-LIKE-16 module participates in repressor complexes to control flowering in Arabidopsis thaliana. The Plant Cell, 2014, 26:2024-2037.
11. Luo Y, Hu J-Y, Li L, Luo Y-L, Wang P-F, Song B-H. Genome-wide analysis of gene expression reveals gene regulatory networks that regulate chasmogamous and cleistogamous flowering in Pseudostellaria heterophylla (Caryophyllaceae). BMC Genomics, 2016, 17:382.
12. Liu L, Adrian J, Pankin A, Hu J-Y, Dong X, von Korff M, Turck F. Induced and natural variation of promoter length modulates the photoperiodic response of FLOWERING LOCUS T. Nature communications, 2014, 5, doi:10.1038/ncomms5558.
13. Falke KC, Glander S, He H, Hu J-Y, de Meaux J, Schmitz G. The spectrum of mutations controlling complex traits and the genetics of fitness in plants. Curr Opin Genetics Dev., 2013, 23: 665-671.
14. He F, Zhang X, Hu J-Y, Turck F, Dong X, Goebel U, Borevitz J, de Meaux J. Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus. Mol Biol Evol, 2012, 29: 3385-3395.
15. He F, Zhang X, Hu J-Y, Turck F, Dong X, Goebel U, Borevitz J, de Meaux J. Widespread Interspecific Divergence in Cis-Regulation of Transposable Elements in the Arabidopsis Genus. Mol Biol Evol, 2012, 29: 1081-1091.
16. Khan M-R, Hu J-Y, He C-Y. Plant hormones including ethylene are recruited in calyx inflation in Solanaceous plants. J. Plant Physiol., 2012, 169:940-948.
17. Khan M-R, Hu J-Y, Ali G-M. Reciprocal loss of CArG-boxes and auxin response elements drives expression divergence of MPF2-Like MADS-box genes controlling calyx inflation. PLoS ONE 2012, 7(8): e42781.
18. Wunder J, He C, Hu J-Y, Li M, Varotto C, Saedler H. Evolution of plant biodiversity. Acta Horticulturae, 2010, 849: 21-32.
19. Khan MR*, Hu J-Y*, Riss S, He C, Saedler H (* co-first authors). MPF2-like-A MADS-box genes control the inflated calyx syndrome in Withania (Solanaceae): roles of Darwinian’s selection. Mol. Biol. Evol., 2009; 26: 2463 – 2473.
20. De Meaux J, Hu J-Y, Tartler U, Goebol U. Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana. Proc. Nat. Acad. Sci. USA, 2008, 105: 8994-8999.