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招生专业 071001-植物学 071023-计算生物学 招生方向 植物系统生物学 工作简历 2017-07~现在, 中科院上海植生所, 研究员 2008-08~现在, 中国科学院上海生命科学研究院计算生物学研究所, 研究员 2006-03~2008-07,美国伊利诺伊大学, 研究助理教授 2004-08~2006-02,美国伊利诺伊大学, 博士后 奖励信息 (1) 2013年度中国科学院青年科学家国际合作奖, 国家级, 2013 (2) Melvin Calvin-Andrew Benson Award 2013, 其他, 2013 (3) SA-SIBS 2011 Young Faculty Award Present, 省级, 2011 (4) 上海市浦江人才人才计划, 省级, 2010 专利成果 ( 1 ) 提高产氢提高提高光合藻类光合产氢效率的方法, 发明, 2012, 第 2 作者, 专利号: 2011101202613 ( 2 ) 一种冠层光合蒸腾测量仪, 实用新型, 2014, 第 3 作者, 专利号: 201320891829.6 ( 3 ) 一种垂直开启式自动冠层同化箱, 实用新型, 2015, 第 2 作者, 专利号: 201520133143.X ( 4 ) 一种植物表型扫描装置, 实用新型, 2015, 第 4 作者, 专利号: 201520299589.X 科研项目 ( 1 ) C4光合作用的调控及进化, 主持, 国家级, 2015-08--2019-08 ( 2 ) 绿色超级稻品种理想冠层模型与调控技术建立, 主持, 国家级, 2014-01--2018-12 ( 3 ) 水稻高产稳产系统模型构建及模拟计算, 主持, 部委级, 2013-08--2018-07 ( 4 ) 植物冠层光合作用的系统生物学研究, 主持, 部委级, 2015-01--2017-12 ( 5 ) Realizing Increased Photosynthetic Efficiency for Sustainable Increases in Crop Yield, 主持, 研究所(学校), 2012-10--2017-10 ( 6 ) Enhancing biomass production from marginal lands with perennial grasses, 主持, 研究所(学校), 2011-10--2015-09 ( 7 ) C4 Rice Phase2:supercharging Photosynthesis, 主持, 研究所(学校), 2013-01--2015-12 ( 8 ) C4-Rice Phase III, 参与, 国家级, 2016-01--2019-01 参与会议 (1)Evolution versus artificial design for enhanced photosynthetic effieincy. 2015-11-15 (2)Redesigning crops for increased yield and resource use efficeincy 2015-10-23 (3)Changchun. Molecular mechanisms of C4 evolution 2015-10-09 (4)Development of a generic crop growth and development model to support biomass crop breeding 2015-09-07 (5)Modeling photosynthesis at cell and tissue levels. 2015-06-15 (6)The role of low CO2 during evolution of C4 photosynthesis 2015-06-01 (7)Modelling of sink-source partitioning 2015-03-06 (8)The role of low CO2 during the evolution of C4 photosynthesis 2015-01-10 (9)ePlant: a modeling framework to support engineering crops for improved water and radiation use efficiencies 2014-11-04 (10)Reclassficiation of C4 photosynthesis in Nature 2014-08-15 (11)Rationale design of photosynthetic metabolism for increased efficiency 2014-07-02 (12)Rationale design of photosynthetic metabolism for increased efficiency. 2014-06-21 (13)Special features of C4 photosynthesis in Setaria viridis. 2014-03-10

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(1) Transcriptome comparisons shed light on the pre-condition and potential barrier for C4 photosynthesis evolution in eudicots", Plant Mol Biol, 2016, 通讯作者 (2) Transcriptome comparisons shed light on the pre-condition and potential barrier for C4 photosynthesis evolution in eudicots", Plant Mol Biol, 2016, 通讯作者 (3) Response of Chloroplast NAD(P)H Dehydrogenase-Mediated Cyclic Electron Flow to a Shortage or Lack in Ferredoxin-Quinone Oxidoreductase-Dependent Pathway in Rice Following Short-Term Heat Stress", Front. Plant Sci, 2016, 通讯作者 (4) Genetics-based dynamic systems model of canopy photosynthesis: the key to improve light and resource use efficiencies for crops, Food and Energy Security, 2016, 通讯作者 (5) Photosynthetic and agronomic traits of an elite hybrid rice Y-Liang-You 900 with a record-high yield, Field Crops Research, 2016, 通讯作者 (6) A new canopy photosynthesis and transpiration measurement system (CAPTS) for canopy gas exchange research, Agricultural and Forest Meteorology,, 2016, 通讯作者 (7) Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis, BMC Genomics, 2016, 通讯作者 (8) RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications, BMC Evolutionary Biology, 2015, 通讯作者 (9) RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications, BMC Evolutionary Biology, 2015, 通讯作者 (10) The benefits of photorespiratory bypasses: how can they work?, Plant Physiology, 2015, 通讯作者 (11) Variations between the photosynthetic properties of elite and landrace Chinese rice cultivars revealed by simultaneous measurements of 820 nm transmission signal and chlorophyll a fluorescence induction, JOURNAL OF PLANT PHYSIOLOGY, 2015, 通讯作者 (12) Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential, Cell, 2015, 第 3 作者 (13) Increased expression of mitochondria-localized carbonic anhydrase activity resulted in an increased biomass accumulation in Arabidopsis thaliana, Journal of Plant Biology, 2014, 通讯作者 (14) Elements required for an efficient NADP-Malic enzyme type C4 photosynthesis, Plant Physiology, 2014, 通讯作者 (15) Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana, Frontiers in Plant Science, 2014, 通讯作者 (16) Three distinct biochemical subtypes of C-4 photosynthesis? A modelling analysis, Journal of Experimental Botany, 2014, 通讯作者 (17) Was low CO2 a driving force of C4 evolution: Arabidopsis responses to long-term low CO2 stress, Journal of Experimental Botany,, 2014, 通讯作者 (18) Major alterations in transcript profiles between C-3-C-4 and C-4 photosynthesis of an amphibious species Eleocharis baldwinii, PLANT MOLECULAR BIOLOGY, 2014, 第 2 作者 (19) Inconsistency of mesophyll conductance estimate causes the inconsistency for the estimates of maximum rate of Rubisco carboxylation among the linear, rectangular and non-rectangular hyperbola biochemical models of leaf photosynthesis - a case study of CO2 enrichment and leaf aging effects in soybean, Plant Science,, 2014, 第 4 作者 (20) The large pools of metabolites involved in intercellular metabolite shuttles in C-4 photosynthesis provide enormous flexibility and robustness in a fluctuating light environment, Mark S(#)(*),Zhu X-G, 2014, 第 2 作者 (21) Optimal crop canopy architecture to maximise canopy photosynthetic CO2 uptake under elevated CO2 - a theoretical study using a mechanistic model of canopy photosynthesis, Functional Plant Biology, 2013, 通讯作者 (22) A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units, Photosynthesis Research, 2013, 通讯作者 (23) IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels, Bioinformatics, 2013, 第 4 作者 (24) Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research, Plant Molecular Biology, 2013, 通讯作者 (25) e-photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis, Plant, Cell and Environment, 2013, 第 1 作者

学术兼职

2012-01-01-今,Frontiers in Plant Systems Biology, Editorial board 2010-01-01-今,Plant Cell & Environment, Editorial board 2010-01-01-今,Frontiers in Plant Physiology, Editorial board 2009-01-01-今,Global Change Biology- Bioenergy, Editorial board

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