当前位置: X-MOL首页全球导师 国内导师 › 万晓华

个人简介

招生专业 081201-计算机系统结构 081203-计算机应用技术 招生方向 生物信息学 高性能计算 图像处理 教育背景 2008-09--2012-06 中国科学院计算技术研究所 博士 工作简历 2015-09~现在, 中国科学院计算技术研究所, 副研究员 2012-12~2014-09,美国加州大学圣地亚哥分校UCSD, 博士后访问学者 2012-07~2015-08,中国科学院计算技术研究所, 助理研究员 奖励信息 (1) 中科院青年创新促进会成员, 一等奖, 院级, 2015 (2) 中科院计算技术研究所优秀研究人员, 一等奖, 研究所(学校), 2014 (3) 中科院计算技术研究所“学术百星”, 一等奖, 研究所(学校), 2013 (4) 中科院院长奖学金, 一等奖, 院级, 2012 (5) 中科院计算技术研究所优秀论文, 二等奖, 研究所(学校), 2011 (6) 中科院计算技术研究所所长奖学金, 特等奖, 研究所(学校), 2011 专利成果 ( 1 ) 芸香科多物种密码子使用模式分析方法和系统, 发明, 2019, 第 1 作者, 专利号: 201910580198.8 ( 2 ) 基于卷积神经网络的ET细胞图像自动分割方法, 发明, 2019, 第 1 作者, 专利号: 201910672147.8 ( 3 ) 一种基于磁共振血管造影图像的脑血管分割方法和系统, 发明, 2019, 第 1 作者, 专利号: 201911105440.2 ( 4 ) 一种高分辨率遥感图像变化检测方法、系统及装置, 发明, 2020, 第 1 作者, 专利号: 202010079647.3 科研项目 ( 1 ) 面向复杂生物数据处理的高效计算方法, 参与, 国家级, 2013-01--2017-12 ( 2 ) 面向高分辨的电子断层三维重构算法研究, 主持, 国家级, 2013-01--2015-12 ( 3 ) 面向大尺度生物图像的高精度三维分子结构重构技术研究, 参与, 国家级, 2015-01--2018-12 ( 4 ) 面向高通量冷冻电镜图像的电子断层重构算法研究, 主持, 国家级, 2017-01--2020-12 ( 5 ) 面向典型疾病的高精度生物大分子三维结构研究, 参与, 国家级, 2017-01--2020-12 ( 6 ) 蛋白质机器的高分辨率冷冻电镜前沿技术及应用, 参与, 国家级, 2017-01--2021-12 ( 7 ) 地球大数据科学工程, 主持, 部委级, 2018-02--2022-12 ( 8 ) 面向深度学习的GPU虚拟化关键方法与技术研究, 主持, 省级, 2018-12--2021-12

研究领域

生物信息学、高性能计算、图像处理

近期论文

查看导师新发文章 (温馨提示:请注意重名现象,建议点开原文通过作者单位确认)

(1) A Parallel Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Heterogeneous Markov Random Field, IEEE Transactions on Nanobioscience, 2020, 通讯作者 (2) DM-SIRT: A Distributed Method for Multi-Tilt Reconstruction in Electron Tomography, 15th International Symposium on Bioinformatics Research and Applications (ISBRA), 2019, 通讯作者 (3) A GPU Inference System Scheduling Algorithm with Asynchronous Data Transfer, IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2019, 第 3 作者 (4) Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Weighted 3D Markov Random Field, IEEE International Conference on Bioinformatics & Biomedicine (BIBM2019), 2019, 通讯作者 (5) AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction, Bioinformatics, 2019, 第 2 作者 (6) Classifying Mixed Patterns of Proteins in High-throughput Microscopy Images Using Deep Neural Networks, 2019 International Conference on Intelligent Computing, 2019, 通讯作者 (7) A Consensus Framework of Distributed Multiple-tilt Reconstruction in Electron Tomography, Journal of Computational Biology, 2019, 通讯作者 (8) Analysis of Codon Usage Patterns in Citrus Based on Coding Sequence Data, 15th International Symposium on Bioinformatics Research and Applications (ISBRA), 2019, 通讯作者 (9) Fiducial marker detection via deep learning approach for electron tomography, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018, 第 3 作者 (10) ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer, Journal of Computational Biology, 2018, 第 5 作者 (11) AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction, Bioinformatics, 2018, 第 2 作者 (12) Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application, IEEE International Conference on Bioinformatics & Biomedicine (BIBM2018), 2018, 第 5 作者 (13) Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods, Journal of Structural Biology, 2017, 第 1 作者 (14) AuTom: A novel automatic platform for electron tomography reconstruction, Journal of Structural Biology, 2017, 第 1 作者 (15) A Two-phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 通讯作者 (16) 3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography., Advanced Structural and Chemical Imaging, 2017, 第 4 作者 (17) ET: SPEC an accurate imaging model for electron tomography, Quantitative Bio Imaging, 2017, 第 3 作者 (18) A fully automatic geometric parameters determining method for electron tomography, 13th International Symposium on Bioinformatics Research and Applications (ISBRA), 2017, 第 4 作者 (19) Accelerating Electron Tomography Reconstruction Algorithm ICON using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer, 13th International Symposium on Bioinformatics Research and Applications (ISBRA), 2017, 第 5 作者 (20) Accelerating electron tomography reconstruction algorithm ICON with GPU, Biophysics Reports, 2017, 第 5 作者 (21) AutoGDeterm: Automatic Geometry Determination For Electron, Tsinghua Science and Techonology, 2017, 第 4 作者 (22) ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer, Journal of Computational Biology, 2017, 第 5 作者 (23) aWGRS: Automates Paired-end Whole Genome Re-sequencing Data Analysis Framework, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2016, 通讯作者 (24) FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter, Bio-Medical Materials and Engineering, 2015, 通讯作者 (25) BSIRT: A Block-Iterative SIRT Parallel Algorithm Using Curvilinear Projection Model, IEEE Transactions on Nanobioscience, 2015, 通讯作者 (26) A Two-phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 通讯作者 (27) EPiK-a Workflow for Electron Tomography in Kepler, Procedia Computer Science, 2014, 第 2 作者 (28) A marker-free automatic alignment method based on scale-invariant features, Journal of Structural Biology, 2014, 第 3 作者 (29) Iterative methods in large field electron microscope tomography, SIAM Journal on Scientific Computing, 2013, 第 1 作者 (30) High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs, BMC bioinformatics, 2012, 第 1 作者 (31) Three-dimensional Reconstruction Using an Adaptive Simultaneous Algebraic Reconstruction Technique in Electron Tomography, Journal of Structural Biology, 2011, 第 1 作者

学术兼职

2016-10-10-今,CCF生物信息专委会, 委员

推荐链接
down
wechat
bug