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Shang-Qian Xie#, Jian-Feng Xing#, Xiao-Ming Zhang#, Zhao-Yu Liu, Mei-Wei Luan, Jie Zhu, Peng Ling, Chuan-Le Xiao, Xi-Qiang Song*, Jun Zheng* and Ying Chen*. N6-methyladenine DNA Modification in The Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship with Gene Transcription. 2019, Frontiers in Genetics, doi: 10.3389/fgene.2019.01288.
Mei-Wei Luan#, Wei Chen#, Jian-Feng Xing, Chuan-Le Xiao, Ying Chen*, Shang-Qian Xie*. DNA N6-Methyladenosine modification role in transmitted variations from genomic DNA to RNA in Herrania umbratica. 2019, BMC genomics, 20:508 (Corresponding author)
Zhao-Yu Liu#(本科生), Jian-Feng Xing#, Wei Chen#, Mei-Wei Luan, Rui Xie, Jing Huang, Shang-Qian Xie*, Chuan-Le Xiao*. MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae. 2019, Horticulture Research, 6: 78 (Corresponding author，Nature旗下唯一园艺领域Top期刊)
Wen-Tai Ma#(本科生), Zhao-Yu Liu#(本科生), Xiao-Zhou Chen#, Zhen-Liang Lin, Zhong-Bing Zheng, Wei-Guo Miao*, Shang-Qian Xie*. A protein identification algorithm for tandem mass spectrometry by incorporating the abundance of mRNA into a binomial probability scoring model. 2019, Journal of Proteomics, 197:53-59 (Corresponding author)
Shang-Qian Xie#, Yue Han#, Xiao-Zhou Chen, Tai-Yu Cao, Kai-Kai Ji, Jie Zhu, Peng Ling* , Chuan-Le Xiao*. ISOdb: A comprehensive database of full-length isoforms generated by Iso-Seq. 2018, International Journal of Genomics, Article ID 9207637
Chuan-Le Xiao#, Shang-Qian Xie#, Qing-Biao Xie, Zhao-Yu Liu, Jian-Feng Xing, Kai-Kai Ji, Jun Tao*, Liangying Dai*, and Feng Luo*. N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome, 2018, Scientific Reports, 8: 12672 (Co-first author)
J Li#, W Tang#, Y-W Zhang#, K-N Chen, C Wang, Y Liu, Q Zhan, C Wang, S-B Wang, Shang-Qian Xie*, L Wang*. Genome-Wide Association Studies for Five Forage Quality-Related Traits in Sorghum (Sorghum bicolor L.). 2018, Frontiers in Plant Science, 9: 1146 (Corresponding author)
Qian Yu#, Bingying Lin#, Shang-Qian Xie#, Song Gao, Wei Li, Yizhi Liu, Hong-Wei Wang, Danping Huang and Zhi Xie. A homozygous mutation p.Arg2167Trp in FREM2 causes isolated cryptophthalmos. 2018, Human molecular genetics, 27(13): 2357-2366 (Co-first author)
Chuan-Le Xiao, Song Zhu, Minghui He, De Chen, Qian Zhang, Ying Chen, Guoliang Yu, Jinbao Liu, Shang-Qian Xie, Feng Luo, Zhe Liang, De-peng Wang, Xiaochen Bo, Xiao-Feng Gu, Kai Wang and Guang-Rong Yan. N6-Methyladenine DNA Modification in the Human Genome. 2018, Molecular cell, 71(2): 306-318
Chuan-Le Xiao#, Ying Chen#, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Feng Luo, and Zhi Xie, MECAT: an ultra-fast mapping, error correction, and de novo assembly tool kit for single-molecule sequencing reads, Nature Methods, 2017, 14(11):1702-1704
Hongwei Wang#, Yan Wang#, Shang-Qian Xie, Zhi Xie. Global and Cell-type Specific Properties of LincRNAs with Ribosome Occupancy. Nucleic Acids Research, 2017, 45 (5): 2786-2796
Shang-Qian Xie#, Peng Nie#, Yan Wang#, Hongwei Wang, Hongyu Li, Zhilong Yang, Yizhi Liu*, Jian Ren*, Zhi Xie*. RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling. Nucleic Acids Research, 2016, 44(D1): D254-258（“2015中国眼科十大成就”之一）
Shang-Qian Xie, JianGuo Chen, Bruce Walsh. Genetic mapping of sterile genes with epistasis in backcross designs. Heredity, 2014, 112: 165-171
Shang-Qian Xie#, Jian-Ying Feng#, Yuan-Ming Zhang. Linkage group correction using epistatic distorted markers in F2 and backcross populations. Heredity, 2014, 112: 479-488
Shang-Qian Xie, Jia Wen, Yuan-Ming Zhang. Multi-QTL mapping for quantitative traits using epistatic distorted markers. PLoS ONE, 2013, 8(7): e68510
Shang-Qian Xie, JianGuo Chen. A statistical method for genetic mapping of sterility genes that exhibit epistasis in remote hybridization of plants using molecular markers in an F2 population. Chin Sci Bull, 2012, 57: 2681-2687
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