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1.Shilin Chen*.; Xu, J.; Liu, C.; Zhu, Y.; Nelson, D. R.; Zhou, S.; Li, C.; Wang, L.; Guo, X.; Sun, Y.; H Luo, Y Li, J Song, B Henrissat, A Levasseur, J Qian, J Li, X Luo, L Shi, LHe, L Xiang, X Xu, Y Niu, Q Li, Mira V. Han, H Yan, J Zhang, H Chen, A Lv, ZWang, M Liu, David C. Schwartz & C Sun*. Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nature communications 2012, 3, 913. [6]
2. Song, C; Liu, Y; Song, A; Dong, G; Zhao, H; Sun, W; Ramakrishnan, Shyam; Wang, Y; Wang, S; Li, T; Niu, Y; Jiang, J; Dong, B; Xia, Y; Chen, S; Hu, Z; Chen, F; Chen, Shilin The Chrysanthemum nankingense genome provides insights into the evolution and diversification of chrysanthemum flowers and medicinal traits. Molecular plant, 2018 Vol: 11（12）: 1482-1491
3. Shilin Chen*.; Song, J.; Sun, C.; Xu, J.; Zhu, Y.; Verpoorte, R.; Fan, T.-P.*, Herbal genomics: Examining the biology of traditional medicines. Science 2015,347(6219), S27-S29.
4. Xu J , Chu Y, Liao B, Xiao S, Yin Q, Bai R, Su H, Dong L, Li X, Qian J, Zhang J, Zhang Y, Zhang X, Wu M, Zhang J, Li G, Zhang L, Chang Z, Zhang Y, Jia Z, Liu Z, Daniel Afreh, Ruth Nahurira8, Zhang L, Cheng R, Zhu Y, Zhu G, Rao W, Zhou C, Qiao L, Huang Z, Cheng Yung-Chi, Chen Shilin, Panax ginseng genome examination for ginsenoside biosynthesis GigaScience doi: 10.1093 gix093, 2017
5. Sun W; Leng L; Yin Q; Xu M; Huang M; Xu Z; Zhang Y; Yao H; Wang C; Xiong C; Chen S; Jiang C; Xie N; Zheng X; Wang Y; Song C; Reuben J. Peters， The medicinal plant Andrographis paniculate genome provides insight into biosynthesis of the bioactive diterpenoid neoandrographolide,Plant J 2018
6. China Plant BOL Group, DZ LI et al., Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences of the USA 2011, 108, 19641-19646.
7. Z Xu, T Xin, Dorothea Bartels,Y Li, W Gu,H Yao,S Liu,H Yu,X Pu, J Zhou, J Xu, C Xi ,H Lei Jingyuan Song,Shilin Chen.Genome analysis of the ancient tracheophyte Selaginella tamariscinareveals evolutionary features relevant to the acquisition of desiccation tolerance. Mol Plant 2018 [37].
8. Xu, Z.; Peters, R. J.; Weirather, J.; Luo, H.; Liao, B.; Zhang, X.; Zhu, Y.; Ji, A.; Zhang, B.; Hu, S.; Au, K. F.; Song, J*.; Shilin Chen*, Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis. The Plant Journal 2015.
9. ShiLin Chen*.; Pang, X.; Song, J.; Shi, L.; Yao, H.; Han, J.; Leon, C., A renaissance in herbal medicine identification: from morphology to DNA. Biotechnology Advances 2014, 32 (7), 1237-1244.
10. H Xu, J Song, H Luo, Y Zhang, Q Li, Y Zhu, J Xu, Y Li, C Song, B Wang, W Sun, G Shen, X Zhang, J Qian, A Ji, Z Xu, X Luo, L He, C Li, C Sun, H Yan, G Cui, X Li, Xi Li, J Wei, J Liu,Y Wang, A Hayward, D Nelson, Z Ning, RJ. Peters, X Qi, S Chen. Analysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza Mol Plant 2016, Volume 9, Issue 6, p949–952 [7].
11. Pang, X.; Song, J.; Zhu, Y.; Xu, H.; Huang, L.; ShiLin Chen*. Applying plant DNA barcodes for Rosaceae species identification. Cladistics 2011, 27 (2), 165-170.
12. Zhu, Y.; Luo, H.; Zhang, X.; Song, J.; Sun, C.; Ji, A.; Xu, J.; ShiLin Chen*., Abundant and selective RNA-editing events in the medicinal mushroom Ganoderma lucidum. Genetics 2014, 196 (4), 1047-1057.
13. Li, X.; Yang, Y.; Henry, R. J.; Rossetto, M.; Wang, Y.; ShiLin Chen*, Plant DNA barcoding: from gene to genome. Biological Reviews 2015, 90 (1), 157-166.
14. D Zhang; C Jiang; C Huang; D Wen; J Lu; S Chen; T Zhang; Y Shi; J Xue; W Ma; L Xiang; W Sun; Shilin Chen, The light-induced transcription factor FtMYB116 promotes accumulation of rutin in Fagopyrum tataricum. Plant Cell & Environment 2018
15. Jung Chao Yuntao Dai Robert Verpoorted Wing Lame Yung-Chi Chenge Li-Heng Pao Wei Zhang Shilin Chen Major achievements of evidence-based traditional Chinese medicine in treating major diseases Biochemical Pharmacology Volume139, 1 September 2017, Pages 94-10
16. Huang Z,, Xu J,, Xiao S, Liao B, Gao Y, Zhai C, Qiu X, Xu W and Chen Shilin. Comparative optical genome analysis of two pangolin species: Manis pentadactyla and Manis javanica. Giga Science 2016,5, 1-5
17. Li, Q.; Li, Y.; Song, J.*; Xu, H.; Xu, J.; Zhu, Y.; Li, X.; Gao, H.; Dong, L.; Qian, J.; Sun, C, Shilin Chen*., High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy. New Phytologist 2014, 204 (4), 1041-1049.
18. C Wang, X Su, W Sun, S Zhou, J Zheng, M Zhang, M Sun, J Xue, X Liu, J Xing, Shilin Chen., Efficient production of succinic acid from herbal extraction residue hydrolysate, Bioresource Technology 2018
19. LL Dong, J Xu ,Y Li,H Fang,W Niu,X Li,Y Zhang,W Ding,SL Chen, Manipulation of microbial community in the rhizosphere alleviates the replanting issues in Panax ginseng。Soil Biology and Biochemistry Volume 125, October 2018, Pages 64-74
20. R Shi, Z Hu, H Lu, L Liu, L Xu, Y Liu, H Wu, B Huang, G Zhang,* S Chen,* F Yang*, Hierarchical Nanostructuring Array Enhances Mid-Hybridization for Accurate Herbal Identification via ITS2 DNA Barcode. Analytical Chemistry, 2019, doi: 10.1021.
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