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2019
Tao Lyu, Yupeng Wang, Zhikang Hu ，Xinlei Li , Jiyuan Li , Zhengqi Fan , Ning Ye , Hengfu Yin， The complete chloroplast genome of Camellia vietnamensis, an economic shrub producing edible seed oil ，Mitochondrial DNA Part B ，2019
Youxiang Zhu, Ruochen Li, Yin Yang, Ning Ye(*),Learning Cascade Attention for Fine-grained Image Classification Learning Systems，Neural Networks，2019. (IF=7.56, 1区)
Zhu Youxiang, Sun Weiming, Cao Xiangying, Wang Chunyan, Wu Dongyang, Yang Yin, Ye Ning(*): TA-CNN: Two-way Attention Models in Deep Convolutional Neural Network for Plant Recognition. Neurocomputing 2019.
Xu Yiqing, Wang Qi'ang, Tanon-Reyes Luis, Cheng Feng, Bi Changwei, Ye Ning, Wu Guoxin: VGSC2: Second generation vector graph toolkit of genome synteny and collinearity. Genomics 2019.
Xu Sheng, Ye Ning, Xu Shanshan: A new method for shoreline extraction from airborne LiDAR point clouds AU - Xu, Sheng. Remote Sensing Letters 2019, 10(5):496-505.
Wang Chunyan, Ye Qiaolin, Ye Ning, Luo Peng, Fu Liyong: Robust capped L1-norm twin support vector machine. Neural Networks 2019. (IF=7.56, 1区)
Li Yanchao, Wang Yongli, Yu Dongjun, Ye Ning, Hu Peng, Zhao Ruxin: ASCENT: Active Supervision for Semi-supervised Learning. IEEE Transactions on Knowledge and Data Engineering 2019. (IF=5.45, CCF A)
2018
Chunyan Wang, Yiqing Xu, Xuelin Wang, Li Zhang, Suyun Wei, Qiaolin Ye, Youxiang Zhu, Hengfu Yin, Manoj Nainwal, Luis, Tanon-Reyes, Feng Cheng, Tongming Yin, Ning Ye(*), GEsture: an online hand-drawing tool for gene expression pattern search, PeerJ，2018
Li X., Fan Z., Guo H., Ye N., Lyu T., Yang W., Wang J., Wang J. T., Wu B., Li J. et al: Comparative genomics analysis reveals gene family expansion and changes of expression patterns associated with natural adaptations of flowering time and secondary metabolism in yellow Camellia. Funct Integr Genomics 2018.
Yu Fengwen, Bi Changwei, Wang Xuelin, Qian Xin, Ye Ning(*): The complete mitochondrial genome of Citrus sinensis. Mitochondrial DNA Part B 2018, 3(2):592-593.
Xu Sheng, Ye Ning, Xu Shanshan, Zhu Fa: A supervoxel approach to the segmentation of individual trees from LiDAR point clouds. Remote Sensing Letters 2018, 9(6):515-523.
Xu Sheng, Xu Shanshan, Ye Ning, Zhu Fa: Automatic extraction of street trees’ nonphotosynthetic components from MLS data. International Journal of Applied Earth Observation and Geoinformation 2018, 69:64-77.
Xu Sheng, Xu Shanshan, Ye Ning, Zhu Fa: Individual stem detection in residential environments with MLS data. Remote Sensing Letters 2018, 9(1):51-60.
Xuelin Wang, Feng Cheng, Dekai Rohlsen, Changwei Bi, Chunyan Wang, Yiqing Xu, Suyun Wei, Qiaolin Ye, Tongming Yin, and Ning Ye(*), Organellar genomes assembly methods and comparative analysis of horticultural plants, Horticulture Research , 2018, IF=4.55 （1区）
Xuelin Wang, Changwei Bi, Chunyan Wang, Qiaolin Ye, Tongming Yin, Ning Ye(*)，Genome-wide identification and characterization of WUSCHEL-related homeobox (WOX) genes in Salix suchowensis，Journal of Forestry Research，2018
Ye Qiaolin, Yang Jian, Liu Fan, Zhao Chunxia, Ye Ning, Yin Tongming: L1-norm Distance Linear Discriminant Analysis Based on An Effective Iterative Algorithm. IEEE Transactions on Circuits and Systems for Video Technology 2018:1-1.
Yan Rui, Ye Qiaolin, Zhang Liyan, Ye Ning, Shu Xiangbo: A Feature Selection Method for Projection Twin Support Vector Machine. Neural Processing Letters 2018.
2017
Zhu Fa, Yang Jian, Xu Sheng, Gao Cong, Ye Ning, Yin Tongming: Incorporating neighbors’ distribution knowledge into support vector machines. Soft Comput 2017, 21(21):6407-6420.
Ye Q., Zhao H., Li Z., Yang X., Gao S., Yin T., Ye N.: L1-Norm Distance Minimization-Based Fast Robust Twin Support Vector k-Plane Clustering. IEEE Trans Neural Netw Learn Syst 2017.(1区)
Ye Ning(*), Wang Xuelin, Li Juan, Bi Changwei, Xu Yiqing, Wu Dongyang, Ye Qiaolin: Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis. PeerJ 2017, 5:e3148.
Wu Dongyang, Bi Changwei, Wang Xuelin, Xu Yiqing, Ye Qiaolin, Ye Ning(*): The complete chloroplast genome sequence of an economic plant Coffea canephora. Mitochondrial DNA Part B 2017, 2(2):483-485.
Wei Suyun, Ye Ning, Yin Tongming: Detecting the Candidate Gender Determinants by Bioinformatic Prediction of miRNAs and Their Targets from Transcriptome Sequences of the Male and Female Flowers in Salix suchowensis. BioMed research international 2017, 2017:9.
Ma Q. Y., Li S. X., Bi C. W., Hao Z. D., Sun C. R., Ye N. (*): Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae). Current Genetics 2017, 63(1):117-129.
2016
Zhu Fa, Yang Jian, Xu Sheng, Gao Cong, Ye Ning, Yin Tongming: Relative density degree induced boundary detection for one-class SVM. Soft Comput 2016, 20(11):4473-4485.
Zhu Fa, Yang Jian, Gao Cong, Xu Sheng, Ye Ning, Yin Tongming: A weighted one-class support vector machine. Neurocomputing 2016, 189:1-10.
Xu Yiqing, Bi Changwei, Wu Guoxin, Wei Suyun, Dai Xiaogang, Yin Tongming, Ye Ning(*): Corrigendum to “VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity”. BioMed research international 2016, 2016:1-1.
Xu Y., Bi C., Wu G., Wei S., Dai X., Yin T., Ye N. (*): VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity. BioMed research international 2016, 2016:7823429.
Wei Suyun, Wang Xuelin, Bi Changwei, Xu Yiqing, Wu Dongyang, Ye Ning(*): Assembly and analysis of the complete Salix purpurea L. (Salicaceae) mitochondrial genome sequence. SpringerPlus 2016, 5(1).
Wang Xuelin, Bi Changwei, Xu Yiqing, Wei Suyun, Dai Xiaogang, Yin Tongming, Ye Ning(*): The Whole Genome Assembly and Comparative Genomic Research ofThellungiella parvula(Extremophile Crucifer) Mitochondrion. International journal of genomics 2016, 2016:1-13.
Hou J., Ye N., Dong Z., Lu M., Li L., Yin T.: Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral "Salicoid" Genome Duplication. Genome biology and evolution 2016, 8(6):1868-1875. IF=4.098
Bi Changwei, Xu Yiqing, Ye Qiaolin, Yin Tongming, Ye Ning(*): Genome-wide identification and characterization of WRKY gene family inSalix suchowensis. PeerJ 2016, 4:e2437.
Bi Changwei, Wang Xuelin, Xu Yiqing, Wei Suyun, Shi Yi, Dai Xiaogang, Yin Tongming, Ye Ning(*): The complete mitochondrial genome of Medicago truncatula. Mitochondrial DNA Part B 2016:1-2.
Bi Changwei, Paterson Andrew H., Wang Xuelin, Xu Yiqing, Wu Dongyang, Qu Yanshu, Jiang Anna, Ye Qiaolin, Ye Ning(*): Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches. BioMed research international 2016, 2016:1-18.
2015
Ye Qiaolin, Ye Ning, Yin Tongming: Fast orthogonal linear discriminant analysis with application to image classification. Neurocomputing 2015, 158:216-224.
Ye N. (*), Yin H., Liu J., Dai X., Yin T.: GESearch: An Interactive GUI Tool for Identifying Gene Expression Signature. BioMed research international 2015, 2015:853734.
Hou J., Ye N.（#）, Zhang D., Chen Y., Fang L., Dai X., Yin T.: Different autosomes evolved into sex chromosomes in the sister genera of Salix and Populus. Scientific reports 2015, 5:9076. IF=5.228
2014
Zhu F., Ye N., Yu W., Xu S., Li G. B.: Boundary detection and sample reduction for one-class Support Vector Machines. Neurocomputing 2014, 123:166-173.
Zhu F., Yang J., Ye N., Gao C., Li G. B., Yin T. M.: Neighbors' distribution property and sample reduction for support vector machines. Appl Soft Comput 2014, 16:201-209.
Yin Hengfu, Chen Chun Ju, Yang Jun, Weston David J., Chen Jin Gui, Muchero Wellington, Ye Ning, Tschaplinski Timothy J., Wullschleger Stan D., Cheng Zong Ming: Functional Genomics of Drought Tolerance in Bioenergy Crops. Critical Reviews in Plant Sciences 2014, 33(2):205-224.
Ye Q. L., Ye N., Yin T. M.: Enhanced multi-weight vector projection support vector machine. Pattern Recogn Lett 2014, 42:91-100.
Ye Qiaolin, Ye Ning, Zhao Chunxia, Yin Tongming, Zhang Haofeng: Flexible orthogonal semisupervised learning for dimension reduction with image classification. Neurocomputing 2014, 144(1):417–426.
Guo L., Chen Y., Ye N., Dai X., Yang W., Yin T.: Differential retention and expansion of the ancestral genes associated with the paleopolyploidies in modern rosid plants, as revealed by analysis of the extensins super-gene family. Bmc Genomics 2014, 15(1):612.
Dai X., Hu Q., Cai Q., Feng K., Ye N.（#）, Tuskan G. A., Milne R., Chen Y., Wan Z., Wang Z. et al: The willow genome and divergent evolution from poplar after the common genome duplication. Cell research 2014. IF=15.606，（1区）
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