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ChunzhiZhang,PeiWang,DieTang,ZhongminYang,FeiLu,JianjianQi,NileshR.Tawari,YiShang,CanhuiLi&SanwenHuang.TThegeneticbasisofinbreedingdepressioninpotato.NatureGenetics.(2019).doi:10.1038/s41588-018-0319-1 SpringerNathanM.,AndersonSarahN.,AndorfCarsonM.,AhernKevinR.,BaiFang,BaradOmer,BarbazukW.Brad,BassHankW.,BaruchKobi,Ben-ZviGil,BucklerEdwardS.,BukowskiRobert,CampbellMichaelS.,CannonEthalindaK.S.,ChometPaul,DaweR.Kelly,DavenportRuth,DoonerHugoK.,DuLimeiHe,DuChunguang,EasterlingKatherineA.,GaultChristine,GuanJiahn-Chou,HunterCharlesT.,JanderGeorg,JiaoYinping,KochKarenE.,KolGuy,K?llnerTobiasG.,KudoToru,LiQing,LuFei,Mayfield-JonesDustin,MeiWenbin,McCartyDonaldR.,NoshayJaclynM.,PortwoodJohnL.,RonenGil,SettlesA.Mark,Shem-TovDoron,ShiJinghua,Soifer,Ilya,SteinJoshuaC.,StitzerMichelleC.,SuzukiMasaharu,VeraDanielL.,VollbrechtErik,VrebalovJuliaT.,WareDoreen,WeiSharon,Wimalanathan,Kokulapalan,WoodhouseMargaretR.,XiongWenwei,BrutnellThomasP.ThemaizeW22genomeprovidesafoundationforfunctionalgenomicsandtransposonbiology.NatureGenetics.(2018).doi:10.1038/s41588-018-0158-0 SunSilong,ZhouYingsi,ChenJian,ShiJunpeng,ZhaoHaiming,ZhaoHainan,SongWeibin,ZhangMei,CuiYang,DongXiaomei,LiuHan,MaXuxu,JiaoYinping,WangBo,WeiXuehong,SteinJoshuaC.,GlaubitzJeffC.,LuFei,YuGuoliang,LiangChengzhi,FenglerKevin,LiBailin,RafalskiAntoni,SchnablePatrickS.,WareDoreenH.,BucklerEdwardS.,LaiJinsheng.ExtensiveintraspecificgeneorderandgenestructuralvariationsbetweenMo17andothermaizegenomes.NatureGenetics.(2018).doi:10.1038/s41588-018-0182 KarlA.G.Kremling,Shu-YunChen,Mei-HsiuSu,NicholasK.Lepak,M.CintaRomay,KellyL.Swarts,FeiLu,AnneLorant,PeterJ.Bradbury&EdwardS.Buckler.(2018).Dysregulationofexpressioncorrelateswithrare-alleleburdenandfitnesslossinmaize.Nature.doi:10.1038/nature25966 PunnaRamu?,WilliamsEsuma,RobertKawuki,IsmailYRabbi,ChiedozieEgesi,JessenVBredeson,RebeccaSBart,JanuVerma,EdwardSBuckler,FeiLu?.(2017).Cassavahaplotypemaphighlightsfixationofdeleteriousmutationsduringclonalpropagation.NatureGenetics.doi:10.1038/ng.3845 PunnaRamu?,WilliamsEsuma,RobertKawuki,IsmailYRabbi,ChiedozieEgesi,JessenVBredeson,RebeccaSBart,JanuVerma,EdwardSBuckler,FeiLu?.(2016).CassavaHapMap:Managinggeneticloadinaclonalcropspecies.bioRxiv.doi:http://dx.doi.org/10.1101/077123 CandiceN.Hirsch,CoryD.Hirsch,AlexB.Brohammer,MeganJ.Bowman,IlyaSoifer,OmerBarad,DoronShem-Tov,KobiBaruch,FeiLu,AlvaroG.Hernandez,ChristopherJ.Fields,ChrisL.Wright,KlausKoehler,NathanSpringer,EdwardBuckler,C.RobinBuell,NataliadeLeon,ShawnM.Kaeppler,KevinL.Childs,MarkMikel.(2016).DraftAssemblyofEliteInbredLinePH207ProvidesInsightsintoGenomicandTranscriptomeDiversityinMaize.ThePlantCell.doi:10.1105/tpc.16.00353 WilliamsEsuma,LiezelHerselman,MarykeTineLabuschagne,PunnaRamu,FeiLu,YonaBaguma,EdwardS.Buckler,RobertSeziKawuki.(2016).Genome-wideassociationmappingofprovitaminAcarotenoidcontentincassava.Euphytica.DOI:10.1007/s10681-016-1772-5 Li,Y.-x.,Li,C.,Bradbury,P.J.,Liu,X.,Lu,F.,Romay,M.C.,Glaubitz,J.C.,Wu,X.,Peng,B.,Shi,Y.,Song,Y.,Zhang,D.,Buckler,E.S.,Zhang,Z.,Li,Y.andWang,T.(2016),Identificationofgeneticvariantsassociatedwithmaizefloweringtimeusinganextremelylargemulti-geneticbackgroundpopulation.PlantJ.doi:10.1111/tpj.13174 FeiLu?,MariaCRomay,JeffCGlaubitz,PeterJBradbury,RobJElshire,TianyuWang,YuLi,YongxiangLi,KassaSemagn,XuecaiZhang,AlvaroG.Hernandez,MarkA.Mikel,IlyaSoifer,OmerBarad,EdwardSBuckler?.(2015)High-resolutiongeneticmappingofmaizepan-genomesequenceanchors.NatureCommunications.DOI:10.1038/ncomms7914 GuillaumeP.Ramstein,AlexanderE.Lipka,FeiLu,DeniseE.Costich,JeromeH.Cherney,EdwardS.BucklerandMichaelD.Casler.(2015)Genome-WideAssociationStudyBasedonMultipleImputationwithLow-DepthSequencingData:ApplicationtoBiofuelTraitsinReedCanarygrass.G3:Genes|Genomes|Genetics.DOI:10.1534/g3.115.017533 GlaubitzJC,CasstevensTM,LuF,HarrimanJ,ElshireRJ,SunQ,BucklerES.(2014)TASSEL-GBS:AHighCapacityGenotypingbySequencingAnalysisPipeline.PLoSONE9(2):e90346. LipkaAE,LuF,CherneyJH,BucklerES,CaslerMD,andCostichDE(2014).“Acceleratingtheswitchgrass(PanicumvirgatumL.)breedingcycleusinggenomicselectingapproaches”.PLoSONE9(11),e112227. LuF,LipkaAE,ElshireRJ,GlaubitzJC,CherneyJH,CaslerMD,BucklerES,CostichDE.(2013)Switchgrassgenomicdiversity,ploidyandevolution:novelinsightsfromanetwork-basedSNPdiscoveryprotocol.PLoSGenetics9(1):e1003215. AbhijitSanyal*,AmmirajuS.S.Jetty*,FeiLu*,YeisooYuTeriRambo,JenniferCurrie,KristiKollura,Hye-RanKim,JinfengChen,JianxinMa,PhillipSanMiguel,MingshengChen,RodA.WingandScottA.Jackson.(2010).OrthologouscomparisonsoftheHd1regionacrossgenerarevealHd1genelabilitywithindiploidOryzaspeciesanddisruptionstomicrosyntenyinsorghum.MOLBIOLEVOL.DOI:10.1093/molbev/msq133 JettyS.S.Ammiraju,ChuanzhuFan,YeisooYu,XiangSong,KarenA.Cranston,AnaClaraPontaroli,FeiLu,AbhijitSanyal,NingJiang,TeriRambo,JenniferCurrie,KristiCollura,JaysonTalag,JeffreyL.Bennetzen,MingshengChen,ScottJackson,RodA.Wing.(2010).Spatio-temporalpatternsofgenomeevolutioninallotetraploidspeciesofthegenusOryza.ThePlantJournal.DOI:10.1111/j.1365-313X.2010.04251.x Lu,F.*,Ammiraju,J.S.*,Sanyal,A.*,Zhang,S.*,Song,R.,Chen,J.*,Li,G.,Sui,Y.,Song,X.,Cheng,Z.,deOliveira,A.C.,Bennetzen,J.L.,Jackson,S.,Wing,R.A.,andChen,M.(2009).ComparativesequenceanalysisoftheMONOCULM1orthologousregionsinfourteenOryzagenomes.ProcNatlAcadSciUSA.106(6):2071-6. Ammiraju,J.S.*,Lu,F*.,Sanyal,A.*,Yu,Y.,Song,X.,Jiang,N.,Pontaroli,A.C.,Rambo,T.,Currie,J.,Collura,K.,Talag,J.,Fan,C.,Goicoechea,J.L.,Zuccolo,A.,Chen,J.,Bennetzen,J.L.,Chen,M.,Jackson,S.,andWing,R.A.(2008).DynamicEvolutionofOryzaGenomesIsRevealedbyComparativeGenomicAnalysisofaGenus-WideVerticalDataSet.ThePlantCell10.1105/tpc.1108.063727 LukasA.Mueller,RenéKleinLankhorst,StevenD.Tanksley,JamesJ.Giovannoni,RuthWhite,JuliaVrebalov,ZhangjunFei,JoycevanEck,RobertBuels,AdriA.Mills,NaamaMenda,IsaakY.Tecle,AurelianoBombarely,StephenStack,SuzanneM.Royer,Song-BinChang,LindsayA.Shearer,ByungDongKim,Sung-HwanJo,Cheol-GooHur,DoilChoi,Chang-BaoLi,JiuhaiZhao,HonglingJiang,YuGeng,YuanyuanDai,HuajieFan,JinfengChen,FeiLu,etal.(2009).ASnapshotoftheEmergingTomatoGenomeSequence.ThePlantGenome.10.3835/plantgenome2008.08.0005:78-92 LiC-B,ZhaoJH,JiangHL,GengY,DaiYY,FanHJ,ZhangDF,ChenJF,LuF,ShiJF,SunSH,ChenJJ,YanXH,LuC,ChenMS,ChengZK,LingHQ,WangY,XueYB,LiC.(2008).AsnapshotoftheChineseSOLProject.JournalofGenomicsandGenetics.35:387-390 ChenJF,LuF,ChenSS,TaoSH.SignificantpositivecorrelationbetweentherecombinationrateandGCcontentinthehumanpseudoautosomalregion.Genome(2006)49:413–419.

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