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1.WangX,GuoH,WangJ,LeiT,LiuT,WangZ,LiY,LeeTH,LiJ,TangH,JinD,PatersonAH.Comparativegenomicde-convolutionofthecottongenomerevealedadecaploidancestorandwidespreadchromosomalfractionation.Newphytologist2016,209(3):1252-1263.
2.XiyinWang,JingpengWang,DianchuanJin,HuiGuo,Tae-HoLee,TaoLiuandAndrewH.Paterson.GenomeAlignmentSpanningMajorPoaceaeLineagesRevealsHeterogeneousEvolutionaryRatesandAltersInferredDatesforKeyEvolutionaryEvents.MolecularPlant2015,8(6):885-898.
3.WangX,WangZ,GuoH,ZhangL,WangL,LiJ,JinD,PatersonAH.Telomere-centricgenomerepatterningdeterminesrecurringchromosomenumberreductionsduringtheevolutionofeukaryotes.NewPhytologist2015,205(1):378-389.
4.DingM,YeW,LinL,HeS,DuX,ChenA,CaoY,QinY,YangF,JiangY,ZhangH,WangX,PatersonAH,RongJ.TheHairlessStemPhenotypeofCotton(Gossypiumbarbadense)IsLinkedtoacopia-LikeRetrotransposonInsertioninhomeodomainleucinezipperGene(HD1).Genetics2015,201(1):143-154.
5.LiC,ZhangY,ZhangK,GuoD,CuiB,WangX,andHuangX.PromotingFlowering,LateralShootOutgrowth,LeafDevelopment,andFlowerAbscissioninTobaccoPlantsOverexpressingCottonFLOWERINGLOCUST(FT)-LikeGeneGhFT1.FrontiersinPlantSciences2015,6:454-454.
6.RatnaparkheMB,LeeTH,TanX,WangX,LiJ,KimC,RainvilleLK,LemkeC,ComptonRO,RobertsonJ,GalloM,BertioliDJ,PatersonAH.Comparativeandevolutionaryanalysisofmajorpeanutallergengenefamilies.GenomeBiolEvol2014,6(9):2468-2488.
7.BoulosChalhoub,FranceDenoeud,Shengyi,Liu,YongmingZhou,IsobelA.P.Parkin,HaibaoTang,XiyinWang*,JulienChiquet,HarryBelcram,ChaoboTong,BirgitsSamans,CorinneDaSilva,MargotCorréa,JérémyJust,…,DaveEdwards,WeiHua†,AndrewG.Sharpe§,AndrewH.Paterson,ChunyunGuan,PatrickWincker.Earlyallopolyploidevolutioninthepost-neolithicBrassicanapusoilseedgenome.Science2014,345(6199):950-953(*XiyinWangisthegroupleaderofcomparativegenomicsresearch)(citation#39)
8.KimC*,WangX*,LeeTH,JakobK,LeeGJ,PatersonAH:ComparativeAnalysisofMiscanthusandSaccharumRevealsaSharedWhole-GenomeDuplicationbutDifferentEvolutionaryFates.PlantCell2014,26(6):2420-2429(co-first-author)(citation#5)
9.ParkinIA,KohC,TangH,RobinsonSJ,KagaleS,ClarkeWE,TownCD,NixonJ,KrishnakumarV,BidwellSL,etal:TranscriptomeandmethylomeprofilingrevealsrelicsofgenomedominanceinthemesopolyploidBrassicaoleracea.GenomeBiol2014,15(6):R77-R77.(citation12)
10.GuoH,WangX,GundlachH,MayerKF,PetersonDG,SchefflerBE,CheePW,PatersonAH:ExtensiveandBiasedIntergenomicNonreciprocalDNAExchangesShapedaNascentPolyploidGenome,Gossypium(Cotton).Genetics2014,197(4):1153-1163.(citation#2)
11.LiuS,LiuY,YangX,TongC,EdwardsD,ParkinIA,ZhaoM,MaJ,YuJ,HuangS,etal:TheBrassicaoleraceagenomerevealstheasymmetricalevolutionofpolyploidgenomes.NatCommun2014,5:3930.(XiyinWangisthePIofcomparativegenomicsresearch)(citation#40)
12.LeeTH,GuoH,WangX,KimC,PatersonAH:SNPhylo:apipelinetoconstructaphylogenetictreefromhugeSNPdata.BMCGenomics2014,15:162.(citation#4)
13.Renny-ByfieldS,GallagherJP,GroverCE,SzadkowskiE,PageJT,UdallJA,WangX,PatersonAH,WendelJF:AncientgeneduplicatesinGossypium(cotton)exhibitnear-completeexpressiondivergence.GenomeBiolEvol2014,6(3):559-571.(citation#5)
14.HeN,ZhangC,QiX,ZhaoS,TaoY,YangG,LeeTH,WangX,CaiQ,LiD,etal:DraftgenomesequenceofthemulberrytreeMorusnotabilis.NatCommun2013,4:2445.(XiyinWangisthePIofcomparativegenomicsresearch)(citation#30)
15.WangZ,ZhangD,WangX,TanX,GuoH,PatersonAH:Awhole-genomeDNAmarkermapforcottonbasedontheD-genomesequenceofGossypiumraimondiiL.G3(Bethesda)2013,3:1759-1767.(citation#14)
16.GuoH,LeeTH,WangX,PatersonAH:Functionrelaxationfollowedbydiversifyingselectionafterwhole-genomeduplicationinfloweringplants.PlantPhysiol2013,162(2):769-778.(citation#18)
17.ZhangD,GuoH,KimC,LeeTH,LiJ,RobertsonJ,WangX,WangZ,PatersonAH:CSGRqtl,acomparativequantitativetraitlocusdatabaseforSaccharinaegrasses.PlantPhysiol2013,161(2):594-599.(citation#6)
18.WangY,WangX,LeeTH,MansoorS,PatersonAH:GenebodymethylationshowsdistinctpatternsassociatedwithdifferentgeneoriginsandduplicationmodesandhasaheterogeneousrelationshipwithgeneexpressioninOryzasativa(rice).NewPhytol2013,198(1):274-283.(citation#11)
19.LeeTH,TangH,WangX,PatersonAH:PGDD:adatabaseofgeneandgenomeduplicationinplants.NucleicAcidsRes2013,41(D1):D1152-1158.(citation#58)
20.PatersonAH,WendelJF,GundlachH,GuoH,JenkinsJ,JinD,LlewellynD,ShowmakerKC,ShuS,UdallJ,etal:RepeatedpolyploidizationofGossypiumgenomesandtheevolutionofspinnablecottonfibres.Nature2012,492(7429):423-427.(XiyinWangisthePIofcomparativegenomicsresearch)(citation#194)
21.TheTomatoGenomeSequencingProjectConsortium.Thegenomesgenomesequenceprovidesinsightsintofleshyfruitevolution.Nature2012,485(7400)：635-641.(Wang.X.isaPIandgroupleaderofcomparativegenomicsresearch)(citation#633)
22.WangY,WangX,PatersonAH:Genomeandgeneduplicationsandgeneexpressiondivergence:aviewfromplants.AnnNYAcadSci2012,1256:1-14.(citation#45)
23.WangY,TangH,DebarryJD,TanX,LiJ,WangX,LeeTH,JinH,MarlerB,GuoH,etal:MCScanX:atoolkitfordetectionandevolutionaryanalysisofgenesyntenyandcollinearity.NucleicAcidsRes2012,40(7):e49.(citation#78)
24.JRong,XWang,SRSchulze,ROCompton,TDWilliams-Coplin,VGoff,PWChee,AHPaterson:Types,levelsandpatternsoflow-copyDNAsequencedivergence,andphylogeneticimplications,forGossypiumgenometypes.Heredity2012,108(5):500-506.
25.WangY,WangX,TangH,TanX,FicklinSP,FeltusFA,PatersonAH:Modesofgeneduplicationcontributedifferentlytogeneticnoveltyandredundancy,butshowparallelsacrossdivergentangiosperms.PLoSOne2011,6(12):e28150.(citation#38)
26.WangX,TorresMJ,PierceG,LemkeC,NelsonLK,YukselB,BowersJE,MarlerB,XiaoY,LinL,etal:AphysicalmapofBrassicaoleraceashowscomplexityofchromosomalchangesfollowingrecursivepaleopolyploidizations.BMCGenomics2011,12:470.(citation#10)
27.WangX,WangH,WangJ,SunR,WuJ,LiuS,BaiY,MunJH,BancroftI,ChengF,etal:ThegenomeofthemesopolyploidcropspeciesBrassicarapa.NatGenet2011,43(10):1035-1039.(XiyinWangisthePIofcomparativegenomicsresearch)(citation#557)
28.RatnaparkheMB*,WangX*,LiJ,ComptonRO,RainvilleLK,LemkeC,KimC,TangH,PatersonAH:ComparativeanalysisofpeanutNBS-LRRgeneclusterssuggestsevolutionaryinnovationamongduplicateddomainsanderosionofgenemicrosynteny.NewPhytol2011,192(1):164-178.(co-first-authorship)(citation#17)
29.LinL,TangH,ComptonRO,LemkeC,RainvilleLK,WangX,RongJ,RanaMK,PatersonAH:ComparativeanalysisofGossypiumandVitisgenomesindicatesgenomeduplicationspecifictotheGossypiumlineage.Genomics2011,97(5):313-320.(citation#10)
30.WangX,TangH,PatersonAH:Seventymillionyearsofconcertedevolutionofahomoeologouschromosomepair,inparallel,inmajorPoaceaelineages.PlantCell2011,23(1):27-37.(citation#38)
31.LinL,PierceGJ,BowersJE,EstillJC,ComptonRO,RainvilleLK,KimC,LemkeC,RongJ,TangH,etal:AdraftphysicalmapofaD-genomecottonspecies(Gossypiumraimondii).BMCGenomics2010,11:395.(citation#35)
32.Wang,X.,andPaterson,A.H.GeneconversioninangiospermgenomewithanEmphasisongenesduplicatedbypolyploidization.Genes2011,2(1):1-20(citation#12)
33.PatersonAH,FreelingM,TangH,WangX:Insightsfromthecomparisonofplantgenomesequences.AnnuRevPlantBiol2010,61(1):349-372.(citation#112)
34.TangH,BowersJE,WangX,PatersonAH:Angiospermgenomecomparisonsrevealearlypolyploidyinthemonocotlineage.ProcNatlAcadSciUSA2010,107(1):472-477.(citation#112)
35.WangX,GowikU,TangH,BowersJE,WesthoffP,PatersonAH:ComparativegenomicanalysisofC4photosyntheticpathwayevolutioningrasses.GenomeBiol2009,10(6):R68.(citation#69)
36.WangX,TangH,BowersJE,PatersonAH:Comparativeinferenceofillegitimaterecombinationbetweenriceandsorghumduplicatedgenesproducedbypolyploidization.GenomeRes2009,19(6):1026-1032.(citation#43)
37.PatersonAH,BowersJE,BruggmannR,DubchakI,GrimwoodJ,GundlachH,HabererG,HellstenU,MitrosT,PoliakovA,Wang.X.etal:TheSorghumbicolorgenomeandthediversificationofgrasses.Nature2009,457(7229):551-556.(citation#1267)
38.PatersonAH,BowersJE,FeltusFA,TangH,LinL,WangX:Comparativegenomicsofgrassespromisesabountifulharvest.PlantPhysiol2009,149(1):125-131.(citation#38)
39.LyonsE,PedersenB,KaneJ,AlamM,MingR,TangH,WangX,BowersJ,PatersonA,LischD,FreelingM:FindingandcomparingsyntenicregionsamongArabidopsisandtheoutgroupspapaya,poplar,andgrape:CoGewithrosids.PlantPhysiol2008,148(4):1772-1781.(citation#125)
40.TangH,WangX,BowersJE,MingR,AlamM,PatersonAH:Unravelingancienthexaploidythroughmultiply-alignedangiospermgenemaps.GenomeRes2008,18(12):1944-1954.(citation#218)
41.TangH,BowersJE,WangX,MingR,AlamM,PatersonAH:Syntenyandcollinearityinplantgenomes.Science2008,320(5875):486-488(citation#326)
42.MingR,HouS,FengY,YuQ,Dionne-LaporteA,SawJH,SeninP,WangW,LyBV,LewisKL,etal:Thedraftgenomeofthetransgenictropicalfruittreepapaya(CaricapapayaLinnaeus).Nature2008,452(7190):991-996.(citation#571)
43.WangX,TangH,BowersJE,FeltusFA,PatersonAH:Extensiveconcertedevolutionofriceparalogsandtheroadtoregainingindependence.Genetics2007,177(3):1753-1763.(citation#64)
44.WangX,ShiX,LiZ,ZhuQ,KongL,TangW,GeS,LuoJ:StatisticalinferenceofchromosomalhomologybasedongenecolinearityandapplicationstoArabidopsisandrice.BMCBioinformatics2006,7:447.(citation#55)
45.ShiX*,WangX*,LiZ,ZhuQ,TangW,GeS,LuoJ:Nucleotidesubstitutionpatterninriceparalogues:implicationfornegativecorrelationbetweenthesynonymoussubstitutionrateandcodonusagebias.Gene2006,376(2):199-206.(co-first-authorship)(citation#10)
46.WangX,ShiX,HaoB,GeS,LuoJ:DuplicationandDNAsegmentallossinthericegenome:implicationsfordiploidization.NewPhytol2005,165(3):937-946.(citation#224)
47.YuJ,WangJ,LinW,LiS,LiH,ZhouJ,NiP,DongW,HuS,ZengC,etal:TheGenomesofOryzasativa:ahistoryofduplications.PLoSBiol2005,3(2):e38.(citation#671)
48.WangX,ShiX,HaoB:ThetransferRNAgenesinOryzasativaL.ssp.indica.SciChinaCLifeSci2002,45(5):504-511.(citation#14)
49.ShiX,WangX,LiZ,ZhuQ,YangJ,GeS,LuoJ:EvidencethatnaturalselectionistheprimarycauseoftheGuanine-cytosinecontentvariationinricegenes.JournalofIntegrativePlantBiology2007,49(9):1393-1399.(co-first-authorship)(citation#8)
50.WangX,ShiXL,HaoB:ThetRNAandrRNAgenesintheOryzasativagenome.ActaGeneticsSinica2004,31(9):871-877.(citation#3)
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