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16.SPirbandian,SEBarchinger,KMLeung,HSByun,YJangir,RABouhenni,SBReed,MFRomine,DASaffarini,LShi,YAGorby,JHGolbeck,andMYEl-Naggar.2014.ShewanellaoneidensisMR-1nanowiresareoutermembraneandperiplasmicextensionsoftheextracellularelectrontransportcomponents.ProceedingsoftheNationalAcademyofSciencesoftheUnitedStatesofAmerica111:12883-12888.(http://www.pnnl.gov/science/highlights/highlight.asp?id=3779).
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31.SMarritt,TGLowe,JBye,DGGMcMillan,LShi,JFredrickson,JZachara,DJRichardson,MRCheesman,LJCJeukenandJNButt.2012.AfunctionaldescriptionofCymA,thekey-stoneforanaerobicrespiratoryflexibilityinShewanella.BiochemicalJournal444:465–474.
32.BCao,PD.Majors,BAhmed,RSRenslow,ADohnalkova,CPSylvia,LShi,SKjelleberg,JKFredricksonandHalukBeyenal.2012.Biofilmshowsspatiallystratifiedmetabolicresponsestocontaminantexposure.EnvironmentalMicrobiology14:2901-2910.
33.DJRichardson,JNButt,JKFredrickson,JMZachara,LShi,MJEdwards,GWhite,NBaiden,AJGates,SJMarrittandTAClarke.2012.‘Porin-cytochrome’modelformicrobe-to-mineralelectrontransfer.MolecularMicrobiology85:201-212.
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35.EMerkley,BAnderson,JPark,SBelchik,LShi,MMonroe,RSmithandMLipton.2012.Detectionandidentificationofhemec-modifiedpeptidesbyhistidineaffinitychromatography,high-performanceliquidchromatography-massspectrometry,anddatabasesearching.JournalofProteomeResearch11(12):6147-6158.
36.GFWhite,ZShi,LShi,ACDohnakova,JKFredrickson,JMZachara,JNButt,DJRichardsonandTAClarke.2012.Developmentofaproteoliposomemodeltoprobetransmembraneelectron-transferreactions.BiochemicalSocietyTransactions40(6):1257-1260.
37.SMarritt,DGGMcMillan,LShi,JKFredrickson,JMZachara,DJRichardson,LJCJeukenandJNButt.2012.TherolesofCymAinsupportoftherespiratoryflexibilityofShewanellaoeidensisMR-1.BiochemicalSocietyTransactions40(6):1217-1221.
38.MBreuer,PZaezycki,LShi,TAClarke,MJMarcus,JNButt,DJRichardson,JKFredrickson,JMZachara,JBlumbergerandKMRosso.2012.MolecularstructureandfreeenergylandscapefromelectrontransportinthedecahaemcytochromeMtrF.BiochemicalSocietyTransactions40(6):1198-12603.
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42.SJTomanicek,AJohs,MSSawhney,AGardberg,LShiandLLiang.2012.CrystallizationandpreliminaryX-raycrystallographicstudiesoftheoutermembranecytochromeOmcAofShewanellaoneidensisMR-1.ActaCrystallographicaSectionFStructuralBiologyandCrystallizationCommunications68(Pt1):53-55.
43.LShi*,SMBelchik,AEPlymale,SHeald,ACDohnalkova,KSybirna,HBottin,TCSquier,JMZacharaandJKFredrickson.2011.Purificationandcharacterizationof[NiFe]-hydrogenaseofShewanellaoneidensisMR-1.AppliedandEnvironmentalMicrobiology77:5584-5590.
44.LShi*,SMBelchik,ZWang,DWKennedy,ACDohnalkova,MJMarshall,JMZacharaandJKFredrickson.2011.IdentificationandcharacterizationofUndAHRCR-6,anoutermembraneendecahemec-typecytochromeofShewanellasp.strainHRCR-6.AppliedandEnvironmentalMicrobiology77:5521-5523.
45.SMBelchik,DWKennedy,ACDohnalkova,YWang,PCSevinc,HWu,YLin,HPLu,JKFredricksonandLShi*.2011.ExtracellularreductionofhexavalentchromiumbycytochromesMtrCandOmcAofShewanellaoneidensisMR-1.AppliedandEnvironmentalMicrobiology77:4035-4011.
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47.TAClarke,MEdwards,AJGates,AHall,GWhite,JBradley,CReardon,LShi,ABeliaev,MMarshall,ZWang,N.Watmough,JFredrickson,JZachara,JuleaNButtandDJRichardson.2011.Thestructureofabacterialcellsurfacedeca-hemeelectronconduit.ProceedingsofNationalAcademyofScienceoftheUnitedStatesofAmerica108:9384-9389.(http://www.nature.com/nchembio/journal/v7/n7/full/nchembio.606.html).
48.BCao,BAhmed,DWKennedy,ZWang,LShi,MJMarshall,JKFredrickson,NGIsern,PDMajorsandHBeyenal.2011.ContributionofextracellularpolymericsubstancesfromShewanellasp.HRCR-1biofilmstoU(VI)immobilization.EnvironmentalScience&Technology45:5483-5490.
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56.LShi*,SMChowdhury,HSSmallwood,HYoon,HMMottaz-Brewer,ADNorbeck,JEMcDermott,TRWClauss,FHeffron,RDSmithandJAdkins*.2009.ProteomicinvestigationofthetimecourseresponsesofRAW264.7macrophagestoinfectionwithSalmonellaentrica.InfectionandImmunity77:3227–3233.
57.LShi*,CAnsong,HSSmallwood,LRommereim,JEMcDermott,HMBrewer,ADNorbeck,RTaylor,JKGustin,FHeffron,RDSmith,andJNAdkins*.2009.ProteomeofSalmonellaentericaserotypeTyphimuriumgrowninalowMg2+/pHmedium.JournalofProteomeandBioinformatics2(9):388-397.
58.RSHartshorne,CLReardon,DRoss,JNuester,TAClarke,AJGates,PCMills,JKFredrickson,JMZachara,LShi,ASBeliaev,MJMarshall,MTien,SBrantley,JNButtandDJRichardson.2009.Characterizationofanelectronconduitbetweenbacteriaandtheextracellularenvironment.ProceedingsofNationalAcademyofScienceoftheUnitedStatesofAmerica106(52):22169-22174.(http://sciencenow.sciencemag.org/cgi/content/full/2009/1217/3).
59.SMChowdhury,LShi,HYoon,LMRommereim,ADNorbeck,KJAuberry,JNAdkins,FHeffron,andRDSmith.2009.Amethodforinvestigatingprotein-proteininteractionsrelatedtoSalmonellatyphimuriumpathogenesis.JournalofProteomeResearch.8:1504-1514.
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66.TAClarke,THolley,RSHartshorne,JKFredrickson,JMZachara,LShi,andDJRichardson.2008.TheroleofmultihaemcytochromesintherespirationofnitriteinEscherichiacoliandFe(III)inShewanellaoneidensis.BiochemicalSocietyTransaction.36(Pt5):1005-1010.
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68.BHLower,RDLins,ZOestreicher,TPStraatsma,MFHochellaJr.,LShiandSKLower.2008.Invitroevolutionofapeptidewithahematitebindingmotifthatmayconstituteanaturalmetal-oxidebindingarchetype.EnvironmentalScience&Technology.42:3821-3827.
69.HZhang,XTang,GMunske,NZakharova,.Yang,CZheng,MWolff,NTolic,GAnderson,LShi,MMarshall,JKFredricksonandJBruce.2008.InvivoidentificationofoutermembraneproteinOmcA-MtrCinteractionnetworkinShewanellaoneidensisMR-1cellsusingnovelhydrophobicchemicalcross-linkers.JournalofProteomeResearch.7:1712-1720.
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72.RSHartshorneRS,BNJepson,TAClarke,SJField,JKFredrickson,JZachara,LShi,JNButtandDJRichardson.2007.CharacterizationofShewanellaoneidensisMtrC:acellsurfacedecahemecytochromeinvolvedinrespiratoryelectrontransporttoextracellularelectronacceptors.JournalofBiologicalInorganicChemistry12:1083-1094.
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75.NSWigginton,KMRosso,BHLower,LShiandMFHochella,Jr.2007.Electrontunnelingpropertiesofouter-membranedecahemecytochromesfromShewanellaoneidensis.GeochimicaetCosmochimicaActa.71:543-555.
76.YXiong,LShi,BChen,MUMayer,BHLower,YLonder,SBose,MFHochella,JKFredrickson,andTCSquier.2006.High-affinitybindinganddirectelectrontransfertosolidmetalsbypurifiedmetalreducingproteinOmcAdecahemecytochrome.JournaloftheAmericanChemicalSociety.128:13978-13979.(http://www.pnl.gov/biology/highlights/2006111706.stm)
77.LShi*,JNAdkins,JRColeman,ADohnalkova,AASchepmoes,HMMottaz,ADNorbeck,SOPurvine,HSSmallwood,JForbes,PGros,SUzzau,KDRodland,FHeffron,RDSmithandTCSquier.2006.ProteomicanalysisofSalmonellaentericaserovarTyphimuriumisolatedfromRAW264.7macrophages:identificationofanovelproteinthatcontributestothereplicationofserovarTyphimuriuminsidemacrophages.JournalofBiologicalChemistry.281:29131-29140.(alsofeaturedinASM'sMicrobeWorldRadio:http://www.flpradio.com/microbeworld/audio/061225-070119/070102.mp3).
78.LShi*,BChen,ZWang,DAElias,MUMayerYAGorby,SNi,BHLower,DWKennedy,DSWunschel,HMMottaz,MJMarshall,EAHill,ASBeliaev,JMZachara,JKFredricksonandTCSquier.2006.Isolationofahigh-affinityfunctionalproteincomplexbetweenOmcAandMtrC:twodecahemec-typecytochromesofShewanellaoneidensisMR-1.JournalofBacteriology.188:4705-4714.
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80.YAGorby,SYanina,JSMcLean,KMRosso,DMoyles,ADohnalkova,TJBeveridge,ISChang,AKorenevski,BHKim,KSKim,DECulley,SBReed,MFRomine,DASaffarini,EAHill,LShi,DAElias,DWKennedy,GPinchuk,KWatanabe,SIshii,BLogan,KHNealsonandJKFredrickson.2006.ElectricallyconductivebacterialnanowiresproducedbyShewanellaoneidensisstrainMR-1andothermicroorganisms.ProceedingsofNationalAcademyofScienceoftheUnitedStatesofAmerica.103:11358-11363.
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83.WZhang*andLShi*.2005.Distributionandevolutionofmultiple-stepphosphorelayinprokaryotes:lateraldomainrecruitmentinvolvedintheformationofhybrid-typehistidinekinases.Microbiology151:2159-2173.
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*Correspondingauthor
Bookchapter
L.Shi,MTien,JKFredrickson,JMZacharaandKMRosso.2016.Microbialredoxproteinsandproteincomplexesforextracellularrespiration.,pp187–216.In“RedoxProteinsinSupercomplexesandSignalosomes”(RicardoLouroandIreneDiazMoreno,Eds,CRCPress).
Workshopreport
L.Shi,G.Reguera,H.Beyenal,A.LuandJ.Liu.2015.WorkshopReportofUS-ChinaCollaborativeResearchonMicrobe-MineralInteraction:MicrobialExtracellularElectronTransferwithMineralsasElectronSourcesandSinks.PreparedfortheUSNSF.
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