个人简介
个人简介:余光创,男,哲学博士,2005年在华南农业大学获得理学学士学位,2009年在安徽医科大学获得理学硕士学位,2017年在香港大学获得哲学博士学位。2018年9月任南方医科大学基础医学院生物信息学系教授,2019年7月任生物信息学系副主任(主持全面工作)。致力于开发生物信息学工具用于生物学数据的分析和可视化。以第一作者在Molecular Biology and Evolution, Methods in Ecology and Evolution和Bioinformatcs等国际期刊发表多篇研究论文,所发表的论文中有5篇ESI高被引论文。
主持课题(包括教学、科研):
序号
课题名称
项目来源
资助金额
起止年份
1
南方医科大学第三层次人才引进科研项目
南方医科大学
150
2018-2019
近期论文
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代表性论文/著作(包括教学、科研):
1. LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu*. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution. 2019, accepted. (IF: 14.797)
2. G Yu*, TTY Lam, H Zhu, Y Guan*. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution. 2018,35(12):3041-3043.(IF: 14.797)
3. G Yu. Using meshes for MeSH term enrichment and semantic analyses. Bioinformatics. 2018,34(21):3766-3767. (IF: 4.531)
4. G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. (IF: 7.099, ESI高被引论文,)
5. G Yu, QY He*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems. 2016, 12(2):477-479. (IF: 2.855, ESI高被引论文)
6. G Yu*, LG Wang, QY He*. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization. Bioinformatics. 2015, 31(14):2382-2383. (IF: 4.531, ESI高被引论文)
7. G Yu*, LG Wang, GR Yan, QY He*. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics. 2015, 31(4):608-609. (IF: 4.531)
8. X Sun†, G Yu†, Q Xu, N Li, C Xiao, X Yin, K Cao, J Han, QY He*. Putative cobalt- and nickel-binding proteins and motifs in Streptococcus pneumonia. Metallomics. 2013, 5(7):928-935.(IF: 3.571)
9. YY Zhu†, G Yu†, Y Zhang, Z Xu, YQ Huang, GR Yan*, QY He*. A novel andrographolide derivative AL-1 exerts its cytotoxicity on K562 cells through a ROS-dependent mechanism. Proteomics, 2013, 13(1):169-178. (IF: 3.106)
10. G Yu, LG Wang, Y Han, QY He*. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287. (IF: 2.610, ESI高被引论文)
11. G Yu†, CL Xiao†, CH Lu†, HT Jia, F Ge, W Wang, XF Yin, HL Jia, JX He*, QY He*. Phosphoproteome profile of human lung cancer cell line A549. Molecular BioSystems. 2011, 7(2):472-479. (IF: 2.855)
12. G Yu†, F Li†, Y Qin, X Bo*, Y Wu, S Wang*. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics. 2010, 26(7):976-978. (IF: 4.531, ESI高被引论文)
学术兼职
Bioinformatics BMC Bioinformatics Computational Biology and Chemistry Current Bioinformatics Gastroenterology Research and Practice Molecular BioSystems Nucleic Acids Research R Journal等杂志审稿人