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To TL, Piggott BJ, Makahijani K, Yu D, Jan YN, Shu X. (2015) A rationally designed fluorogenic protease reporter visualizes spatiotemporal dynamics of apoptosis in vivo. PNAS. To TL, Fadul MJ, Shu X. (2014) Singlet oxygen triplet energy transfer-based imaging technology for mapping protein-protein proximity in intact cells. Nat Commun. 5, 4072 PMCID: PMC4091638 Yu D, Gustafson WC, Han C, Lafaye C, Noirclerc-Savoye M, Ge WP, Thayer DA, Huang H, Kornberg TB, Royant A, Jan LY, Jan YN, Weiss WA, Shu X. (2014) An improved monomeric infrared fluorescent protein for neuronal and tumour brain imaging. Nat Commun. 5, 3626 PMCID: PMC4077998 Qi, Y., Garren, E.J., Shu, X., Tsien, R.Y., Jin, Y. (2012) Photo-inducible cell ablation inCaenorhabditis elegans using the genetically encoded singlet oxygen generating protein miniSOG. Proceedings of the National Academy of Sciences. 109(19), 7499-504 PMCID: PMC3358873 Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. (2012) Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nat Neurosci. 15(12),1742-51 PMCID: PMC3509268. Ou HD, Kwiatkowski W, Deerinck TJ, Noske A, Blain KY, Land HS, Soria C, Powers CJ, May AP, Shu X, Tsien RY, Fitzpatrick JA, Long JA, Ellisman MH, Choe S, O'Shea CC. (2012) A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell. 151(2), 304-19. PMCID: PMC3681303. A Genetically Encoded Tag for Correlated Light and Electron Microscopy of Intact Cells, Tissues, and Organisms. Shu, X.; Lev-Ram, V.; Deerinck, T. J.; Qi, Y.; Ramko, E. B.; Davidson, M. W.; Jin, Y.; Ellisman, M. E.; Tsien, R. Y. (2011) PLoS Biol. e1001041 Mammalian Expression of Infrared Fluorescent Proteins Engineered from a Bacterial Phytochrome. Shu, X.; Royant, A.; Lin, M. Z.; Aguilera, T.; Lev-Ram, V.; Steinbach, P. A.; Tsien, R. Y. (2009) Science 324, 804-807 Unique Interactions between the Chromophore and Glutamate 16 Lead to Far-red Emission in a Red Fluorescent Protein (front cover article). Shu, X.; Wang, L.; Colip, L.; Kallio, K.; Remington, S. J. (2009) Protein Science 18, 460-466 An alternative excited state proton transfer pathway in a green fluorescent protein variant S205. Shu, X.; Leiderman P.; Gepshtein R. Smith N. R.; Kallio K.; Huppert, D.; Remington, S.J. (2007) Protein Science 16, 2703-2710 Ultrafast Excited State Dynamics in The Green Fluorescent Protein Variant S65T/H148D. 1. Mutagenesis and Structural Studies. Shu, X.; Kallio, K.; Shi, X.; Abbyad, P.; Kanchanawong, P.; Childs, W.; Boxer, S.G.; Remington, S.J. (2007) Biochemistry 46, 12005-12013 Ultrafast Excited State Dynamics in The Green Fluorescent Protein Variant S65T/H148D. 2. Unusual Photophysical Properties. Shi, X.; Abbyad, P.; Shu, X.; Kallio, K.; Kanchanawong, P.; Childs, W.; Remington, S.J.; Boxer, S.G. (2007) Biochemistry 46, 120014-12025 Ultrafast Excited State Dynamics in The Green Fluorescent Protein Variant S65T/H148D. 3. Short- and Long-time Dynamics of the Excited-state Proton Transfer. Leiderman P.; Genosar L.; Huppert D.; Shu, X.; Remington, S.J.; Solntsev K.M.; Tolbert L. M. (2007) Biochemistry 46, 120026-12036 Novel Chromophores and Buried Charges Control Color in mFruits. Shu, X.; Shaner, N. C.; Yarbrough, C. A.; Tsien, R. Y.; Remington, S. J. (2006) Biochemistry 45, 9639-9647 Kindling Fluorescent Protein from Anemonia sulcata: Dark-State Structure at 1.38 Å Resolution. Quillin, M. L.; Anstrom, D. M.; Shu, X.; O'Leary, S.; Kallio, K.; Chudakov, D. M.; Remington, S. J. (2005) Biochemistry 44, 5774-5787 Surface alloying of immiscible metals induced by surface state shift. Shu, X.; Jiang, P.; Che, J. (2003) Surface Science 545, 199-210