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代表性论文(通讯作者#与共同第一作者*文章:24，共40篇；总引用>1000,H-因子:18)：
EthanologenicZymomonasmobilis:
1.Yang,S.*#,Fei.,Q.*,Zhang,Y.,Contreras,L.M.,Utturkar,S.M.,Brown,S.D.,Himmel,M.E.,andZhang,M#.2016.Zymomonasmobilisasamodelsystemforproductionofbiofuelsandbiochemicals.MicrobialBiotechnology(InPress).
2.Yang,S.#,Mohagheghi,A.,Franden,A.,Chou,Y-C.,Dowe,N.,Himmel,M.E.,andZhang,M#.2016.MetabolicengineeringofZymomonasmobilisfor2,3-butanediolproductionfromlignocellulosicbiomasssugars.BiotechnolBiofuels9:189.
3.Yang,S.#,Franden,A.,Chou,Y-C.,Brown,S.D.,Pienkos,P.T.,andZhang,M#.2014.InsightsintoacetatetoxicityinZymomonasmobilis8busingdifferentsubstrates.BiotechnolBiofuels7:140.
4.Yang,S.#,Pan,C.,Hurst,G.B.,Dice,L.,Davison,B.H.,andBrown,S.D.#.2014.ElucidationofZymomonasmobilisphysiologyandstressresponsestoacetatebyquantitativeproteomicsandtranscriptomics.Front.Microbiol.5:246.doi:10.3389/fmicb.2014.00246.
5.Yang,S.,Pan,C.,Tschaplinski,T.J.,Hurst,G.B.Engle,N.L.,Zhou,W.,Dam,P.,Xu,Y.,Rodriguez,M.Jr.,Dice,L.,Johnson,C.M.,Davison,B.H.,andBrown,S.D.2013.SystemsbiologyanalysisofZymomonasmobilisZM4ethanolstressresponses.PLoSONE8(7):e68886.
6.Yang,S.,Land,M.L.,Klingeman,D.M.,Pelletier,D.A.,Lu,S.T.,Martin,S.L.,Guo,H.B.,Smith,J.C.,andBrown,S.D.2010.ParadigmforindustrialstrainimprovementidentifiessodiumacetatetolerancelociinZymomonasmobilisandSaccharomycescerevisiae.Proc.Natl.Acad.Sci.USA.107:10395–10400.
Facultyof1000recommended:http://ec2-176-34-150-24.eu-west-1.compute.amazonaws.com/prime/10030959
7.Yang,S.,Pelletier,D.A.,Lu,S.T,andBrown,S.D.2010.TheZymomonasmobilisregulatorHfqandrelatedSaccharomycescerevisiaeproteinscontributetotoleranceagainstmultiplelignocellulosicpretreatmentinhibitors.BMCMicrobiol.10:135.
8.Yang,S.,Pappas,K.M.,Hauser,L.J.,Land,M.L.,Chen,G-L,Hurst,G.B.etal.2009.ImprovedgenomeannotationforZymomonasmobilis.Nat.Biotechnol.27:893–4.
9.Yang,S.,Tschaplinski,T.J.,Engle,N.L.,Carroll,S.L.,Martin,S.L.,Davison,B.H.,Palumbo,A.V.,Rodriguez,M.Jr.,andBrown,D.,S.2009.TranscriptomicandmetabolomicprofilingofZymomonasmobilisduringaerobicandanaerobicfermentation.BMCGenomics10:34.(Highlyaccessed).
ThermophilicClostridiumthermocellum:
10.Xu,Q.,Resch,M.,Podkaminer,K.,Yang,S.,Baker,J.,Donohoe,B.,Wilson,C.,Klingeman,D.M.,Olson,D.,Decker,S.,Giannone,R.J.,Hettich,R.L.,Brown,S.D.,Lynd,L.R.,Bayer,E.A.,Himmel,M.E.,andBomble,Y.2016.DramaticperformanceofClostridiumthermocellumexplainedbyitswiderangeofcellulasemodalities.ScienceAdvances.2(2):e1501254.
11.Wilson,C.M.*,Yang,S.*,Rodriguez,M.Jr.,Ma,Q.,Johnson,C.M.,Dice,L.,Xu,Y.,andBrown,S.D.2013.Clostridiumthermocellumtranscriptomicprofilesafterexposuretofurfuralorheatstress.BiotechnolBiofuels6:131.
12.Yang,S.,Giannone,R.J.,Dice,L.,Yang,Z.K.,Engle,N.L.,Tschaplinski,T.J.,Hettich,R.L.,andBrown,S.D.2012.ClostridiumthermocellumATCC27405transcriptomic,metabolomicandproteomicprofilesafterethanolstress.BMCGenomics13:336.
13.Brown,S.D.,Guss,A.M.,Karpinets,T.V.,Parks,J.M.,Smolin,N.,Yang,S.,Land,M.L.,etal.2011.MutantalcoholdehydrogenaseleadstoimprovedethanoltoleranceinClostridiumthermocellum.Proc.Natl.Acad.Sci.USA.108:13752-7.
14.Wei,H.,Fu,Y.,Magnusson,L.,Baker,JO.,Maness,PC.,Xu,Q.,Yang,S.,Bowersox,A.,Bogorad,I.,Wang,W.,Tucker,MP.,Himmel,ME.,Ding,S.2014.ComparisonoftranscriptionalprofilesofClostridiumthermocellumgrownoncellobioseandpretreatedyellowpoplarusingRNA-Seq.Front.Microbiol.5:142.
MolecularMicrobe-PlantInteractions:
15.Yang,S.,Peng,Q.,Zhang,Q.,Zou,L.,Li,Y.,Robert,C.etal.2010.Genome-wideidentificationofHrpL-regulatedgenesinnecrotrophicphytopathogenDickeyadadantii3937.PLoSONE5(10):e13472.
16.Yang,S.*,Peng,Q.*,SanFrancisco,M.,Wang,Y.,Zeng,Q.,andYang,C.-H.2008.TypeIIIsecretionsystemgenesofDickeyadadantii3937areinducedbyplantphenolicacids.PLoSONE3(8):e2973.
17.Yang,S.,Zhang,Q.,Peng,Q.,Yi,X.,Chang,J.C.,Reedy,R.M.,Charkowski,A.O.,andYang,C.-H.2008.DynamicregulationofGacAintypeIIIsecretionsystem,pectinasegeneexpression,pellicleformation,andpathogenicityofDickeyadadantii.Mol.Plant-MicrobeInteract.21:133-142.
18.Yang,S.,Zhang,Q.,Guo,J.,Charkowski,A.O.,Glick,B.R.,Ibekwe,A.M.,Cooksey,D.A.,andYang,C.-H.2007.Globaleffectofindole-3-aceticacid(IAA)biosynthesisonmultiplevirulencefactorsofErwiniachrysanthemi3937.Appl.Env.Microbiol.73:1079-1088.
19.Peng,Q.*,Yang,S.*,Charkowski,A.O.,Yap,M.N.,Steeber,D.A.,Keen,N.T.,andYang,C.-H.2006.PopulationbehavioranalysisofdspEandpelDexpressioninErwiniachrysanthemi3937.Mol.Plant-MicrobeInteract.19:451-7.
20.Yang,S.,Perna,N.T.,Cooksey,D.A.,Okinaka,Y.,Lindow,S.E.,Ibekwe,A.M.,Keen,N.T.,andYang,C-H.2004.Genome-wideidentificationofplant-upregulatedgenesofErwiniachrysanthemi3937usingaGFP-basedIVETleafarray.Mol.Plant-MicrobeInteract.17:999-1008.
Others(Lignin,Systemsbiology,Meta-transcriptomics,andBioinformaticsetc.):
21.Yang,S#Wang,W.#,Wei,H.,Wychen,S.V.,Pienkos,P.T.,Zhang,M.,andHimmel,M.2016.Impactofnitrogendeficiencystrategiesonlipidproductionforyeastandfungalspecies.Energies.9:685.
22.Wang,W*#.,Yang,S.*#,Pienkos,P.T.,andJohnson,D.2014.Connectinglignin-degradationpathwaywithpretreatmentinhibitorsensitivityofCupriavidusnecator.Front.Microbiol.5:247.
23.Zeng,Y.,Zhao,S.,Yang,S.,andDing,S.2014.Ligninplaysthenegativeroleinthebiochemicalprocessforproducinglignocellulosicbiofuels.Curr.Opin.Biotechnol.27:38-45.
24.Yang,S.#,Guarnieri,M.T.,Smolinski,S.,Ghirardi,M.,andPienkos,P.T.2013.DenovotranscriptomicanalysisofhydrogenproductioninthegreenalgaChlamydomonasmoewusiithroughRNA-Seq.BiotechnolBiofuels6:118.
25.Chou,W-C.,Ma,Q.,Yang,S.,Cao,S.,Brown,S.D.,andXu,Y.2015.Analysisofstrand-specificRNA-seqdatausingmachinelearningrevealsthestructuresoftranscriptionunitsinClostridiumthermocellum.NucleicAcidsRes.doi:10.1093/nar/gkv177.
26.Guarnieri,M.T.,Nag,A.,Yang,S.,andPienkos,P.T.2013.ProteomicanalysisofChlorellavulgaris:Potentialtargetsforenhancedlipidaccumulation.JProteomics.pii:S1874-3919(13)00278-9.
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