Tobias, Douglas J. - University of California, Irvine

个人简介

National Institutes of Health Predoctoral Trainee, 1987-1990 National Institutes of Health National Research Service Award,1991-1993 Elected Fellow of the American Association for the Advancement of Science, 2006 Award for Outstanding Contributions to Undergraduate Education in the School of Physical Sciences, 2009

研究领域

Atmospheric and Environmental/Chemical Biology/Physical Chemistry and Chemical Physics/Theoretical and Computational

近期论文

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M. Heyden, J. A. Freites, M. B. Ulmschnieder, S. H. White, and D. J. Tobias, Proteins in biological membranes and how they get there, Soft Matter, accepted. [Invited Tutorial Review] J. A. Freites, E. V. Schow, S. H. White, and D. J. Tobias, Microscopic origin of gating current fluctuations in a potassium channel voltage sensor, Biophys. J., accepted. E. V. Schow, J. A. Freites, A. Nizkorodov, S. H. White, and D. J. Tobias, Coupling between the voltage-sensing and pore domains in a voltage-gated potassium channel, Biochim. Biophys. Acta - Biomembranes, accepted. M. H. Cheng, K. M. Callahan, A. M. Margarella, D. J. Tobias, and J. C. Hemminger, Ambient pressure x-ray photoelectron spectroscopy and molecular dynamics simulation studies of liqid/vapor interfaces of aqueous NaCl, RbCl, and RbBr solutions, J. Phys. Chem. C 116, 4545-4555 (2012). S. Funkner, G. Niehues, D. A. Schmidt, M. Heyden, K. M. Callahan, G. Schwaab, D. J. Tobias, and M. Havenith, Watching low frequency motions in aqueous salt solutions – the terahertz vibrational signatures of hydrated ions, J. Am. Chem. Soc. 134, 1030-1035 (2012). P. J. Fleming, J. A. Freites, C. P. Moon, D. J. Tobias, and K. G. Fleming, Outer membrane phospholipase A in phospholipid bilayers: A model system for concerted computational and experimental investigations of amino acid side chain partitioning into lipid bilayers, Biochim. Biophys. Acta - Biomembranes 1818, 126-134 (2012). M. L. Wood, E. V. Schow, J. A. Freites, S. H. White, F. Tombola, and D. J. Tobias, Water wires in atomistic models of the Hv1 proton channel, Biochim. Biophys. Acta - Biomembranes 1818, 286-293 (2012). E. N. Spudich, G. Ozorowski, E. V. Schow, D. J. Tobias, J. L. Spudich, and H. Luecke, A transporter converted into a sensor, a phototaxis signaling mutant at 3.0 Å, J. Mol. Biol. 415, 455-463 (2012). M. Heyden and D. J. Tobias, Hot and crowded: new insights into the dynamics of thermophilic enzymes from multiscale modeling, Biophys. J. 101, 2553-2554 (2011). [New & Notable commentary] T. Lewis, B. Winter, A. C. Stern, M. D. Baer, C. J. Mundy, D. J. Tobias, and J. C. Hemminger, Does nitric acid dissociate at the aqueous solution interface?, J. Phys. Chem. C 115, 21183-21190 (2011). [Cover Article] M. D. Baer, C. J. Mundy, M. J. McGrath, I.-F. W. Kuo, J. I. Siepmann, and D. J. Tobias, Re-examining the properties of the aqueous liquid-vapor interface using dispersion corrected density functional theory, J. Chem. Phys. 135, 124712 (2011). T. Lewis, B. Winter, A. C. Stern, M. D. Baer, C. J. Mundy, D. J. Tobias, and J. C. Hemminger, Dissociation of strong acid revisited: x-ray photoelectron spectroscopy and molecular dynamics simulations of HNO3 in water, J. Phys. Chem. B 115, 9445-9451 (2011). M. Andersson, J. A. Freites, D. J. Tobias, and S. H. White, Structural dynamics of the S4 voltage sensor helix in bilayers lacking lipid phosphates, J. Phys. Chem. B 115, 8732-8738 (2011). N. K. Richards, L. M. Wingen, K. M. Callahan, N. Noshino, M. T. Kleinman, D. J. Tobias, and B. J. Finlayson-Pitts, Nitrate ion photolysis in thin water films in the presence of bromide ions, J. Phys. Chem. A, 115, 5810-5821 (2011). M. Mihailescu, R. G. Vaswani, E. Jardón-Valadez, F. Castro-Román, J. A. Freites, D. L. Worcester, A. R. Chamberlin, D. J. Tobias, and S. H. White, Acyl-chain methyl distributions of liquid-ordered and -disordered membranes, Biophys. J. 100, 1455-1462 (2011). W. D. Brubaker, J. A. Freites, K. J. Golchert, R. A. Shapiro, V. Morikis, D. J. Tobias, and R. W. Martin, Separating instability from aggregation propensity in gS-crystallin variants, Biophys. J. 100, 498-506 (2011). A.-N. Bondar, T. Woolf, and D. J. Tobias, Festschrift in honor of Stephen H. White’s 70th Birthday, J. Membrane Biol. 239, 1-3 (2011). E. V. Schow, J. A. Freites, P. Cheng, A. Bernsel, G. von Heijne, S. H. White, and D. J. Tobias, Arginine insertion in membranes: on the connection between molecular dynamics simulations and translocon-mediated insertion experiments, J. Membrane Biol. 239, 35-48 (2011). E. Jardón-Valadez, A.-N. Bondar, and D. J. Tobias, Coupling of retinal, protein, and water dynamics in squid rhodopsin, Biophys. J. 99, 2200-2207 (2010). K. M. Callahan, N. N. Casillas-Ituarte, M. Xu, M. Roeselová, H. C. Allen, and D. J. Tobias, The effect of magnesium cation on the interfacial properties of aqueous salt solutions, J. Phys. Chem. A 114, 8359-8368 (2010). A.-N. Bondar, C. Munoz del Val, J. A. Freites, D. J. Tobias, and S. H. White, Dynamics of SecY translocons with translocation-defective mutations, Structure 18, 847-857 (2010). [Featured Article] J. B. Klauda, R. M. Venable, J. A. Freites, J. W. O’Conner, D. J. Tobias, C. Mondragon-Ramirez, I. Vorobyov, A. D. MacKerell Jr., and R. W. Pastor, Update of the CHARMM all-atom additive force fields for lipids: validation on six lipid types, J. Phys. Chem. B 114, 7830-7843 (2010). E. V. Schow, J. A. Freites, K. Gogna, S. H. White, and D. J. Tobias, Down-state model of the voltage-sensing domain of a potassium channel, Biophys. J. 98, 2857-2866 (2010). K. M. Callahan, N. N. Casillas-Ituarte, M. Xu, M. Roeselová, H. C. Allen, and D. J. Tobias, Solvation of magnesium cation: molecular dynamics simulation and vibrational spectroscopic study of magnesium chloride in aqueous solutions, J. Phys. Chem. A 114, 5141-5148 (2010). [Cover Article] N. N. Casillas-Ituarte, K. M. Callahan, C. Y. Tang, X. Chen, M. Roeselová, D. J. Tobias, and H. C. Allen, Surface organization of aqueous MgCl2 and application to atmospheric marine aerosol chemistry, Proc. Natl. Acad. Sci. USA 107, 6616-6621 (2010). K. Wood, D. J. Tobias, B. Kessler, D. Oesterhelt, G. Zaccai, F. A. A. Mulder, and M. Weik, The low temperature inflection observed in neutron scattering measurements of proteins is due to methyl rotation: direct evidence using isotope labeling, J. Am. Chem. Soc. 132, 4990-4991 (2010). C. W. Harmon, R. L. Grimm, T. M. McIntire, M. D. Petersen, B. Njegic, V. M. Angel, A. Alshawa, J. S. Underwood, D. J. Tobias, R. B. Gerber, M. S. Gordon, J. C. Hemminger, and S. A. Nizkorodov, Hygroscopic growth and deliquescence of NaCl particles mixed with surfactant SDS, J. Phys. Chem. B 114, 2435-2449 (2010). R. L. Grimm, D. J. Tobias, and J. C. Hemminger, D2O water interaction with textured carboxylic acid terminated monolayer surfaces characterized by temperature programmed desorption and molecular dynamics, J. Phys. Chem. C 114, 1570-1579 (2010). J. Heyda, J. Vincent, D. J. Tobias, J. Dzubiella, and P. Jungwirth, Ion specificity at the peptide bond: molecular dynamics simulations of N-methylacetamide in aqueous salt solutions, J. Phys. Chem. B 114, 1213-1220 (2010). S. Sul, Y. Feng, U. Le, D. J. Tobias, and N.-H. Ge, Interactions of tyrosine in Leu-enkephalin at a membrane-water interface: an ultrafast 2D IR study combined with DFT and MD simulation, J. Phys. Chem. B 114, 1180-1190 (2010).