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1. Zhang Yuan-Ming*, Jia Zhenyu, Jim M. Dunwell. Editorial: The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits. Frontiers in Plant Science 9: 100. DOI: 10.3389/fpls.2019.00100
2. Zhang Hongwei#, Wang Xi#, Pan Qingchun#, Li Pei#, Liu Yunjun, Lu Xiaoduo, Zhong Wanshun, Li Minqi, Han Linqian, Juan Li, Wang Pingxi, Li Dongdong, Liu Yan, Li Qing, Yang Fang, Zhang Yuan-Ming*, Wang Guoying*, Li Lin*. QTG-seq accelerates QTL fine mapping through QTL partitioning and whole-genome sequencing on bulked segregant samples. Molecular Plant, online, 2018-12-28, https://doi.org/10.1016/j.molp.2018.12.018.
3. Wen Yang-Jun, Zhang Ya-Wen, Zhang Jin, Feng Jian-Ying, Jim M Dunwell, Zhang Yuan-Ming*. An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2. Briefings in Bioinformatics, bby058, https://doi.org/10.1093/bib/bby058, 18 July 2018
4. Zhang Zhibin, Jim M Dunwell, Zhang Yuan-Ming*. An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biology, 2018, 18: 328.
5. Zhang Li#, Liu Jin-Yang#, Gu Huan, Du Yanfang, Zuo Jian-Fang, Zhang Zhibin, Zhang Menglin, Li Pan, Jim M. Dunwell, Cao Yangrong, Zhang Zuxin*, Zhang Yuan-Ming*. Bradyrhizobium diazoefficiens USDA 110-Glycine max interactome provides candidate proteins associated with symbiosis. Journal of Proteome Research 2018, 17(9): 3061-3074. (cover paper)
6. Wen Yang-Jun, Zhang Hanwen, Ni Yuan-Li, Huang Bo, Zhang Jin, Feng Jian-Ying, Wang Shi-Bo, Jim M. Dunwell, Zhang Yuan-Ming*, Wu Rongling*. Methodological implementation of mixed linear models in multi-locus genome-wide association studies. Briefings in Bioinformatics 2018, 19(4): 700-712
7. Wen-Long Ren#, Yang-Jun Wen#, Jim M. Dunwell, Yuan-Ming Zhang*. pKWmEB: integration of Kruskal-Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study. Heredity 2018, 120(3): 208-218
8. Li Wen-Ting#, Zhang Meng-Meng#, Li Qi-Gang#, Tang Hui, Zhang Li-Fan, Wang Ke-Jun, Zhu Mu-Zhen, Lu Yun-Feng, Bao Hai-Gang, Zhang Yuan-Ming*, Li Qiu-Yan*, Wu Ke-Liang*, Wu Chang-Xin. Whole-genome resequencing reveals candidate mutations for pig prolificacy. Proceedings of the Royal Society Biological Sciences 2017, 284(1869): 20172437.
9. Zhang Jin#, Feng Jian-Ying#, Ni Yuan-Li, Wen Yang-Jun, Niu Yuan, Tamba Cox Lwaka, Yue Chao, Song Qijian, Zhang Yuan-Ming*. pLARmEB: integration of least angle regression with empirical Bayes for multi-locus genome-wide association studies. Heredity 2017, 118(6): 517-524 (Featured Article)
10. Tamba Cox Lwaka, Ni Yuan-Li, Zhang Yuan-Ming*. Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies. PLoS Computational Biology 2017, 13(1): e1005357
11. Zhang Yuan-Ming*, Zhang Yinghao, Guo Mingyue. Epigenetic game theory and its application in plants. Physics of Life Reviews 2017, 20: 158-160
12. Wang Shi-Bo, Wen Yang-Jun, Ren Wen-Long, Ni Yuan-Li, Zhang Jin, Feng Jian-Ying, Zhang Yuan-Ming*. Mapping small-effect and linked quantitative trait loci for complex traits in backcross or DH populations via a multi-locus GWAS methodology. Scientific Reports 2016, 6: 29951
13. Zeng Yan-Da, Sun Jun-Ling, Bu Su-Hong, Deng Kang-Sheng, Tao Tao, Zhang Yuan-Ming, Zhang Tianzhen, Du Xiong-Ming*, Zhou Bao-Liang*. EcoTILLING revealed SNPs in GhSus genes that are associated with fiber- and seed-related traits in upland cotton. Scientific Reports 2016, 6: 29250
14. Zhang Li, Wang Shi-Bo, Li Qi-Gang, Song Jian, Hao Yu-Qi, Zhou Ling, Zheng Huan-Quan, Jim M Dunwell, Zhang Yuan-Ming*. 2016. An integrated bioinformatics analysis reveals divergent evolutionary pattern of oil biosynthesis in high- and low-oil plants. PLoS ONE, 11(5): e0154882
15. Zhou Ling, Luo Longhai, Zuo Jian-Fang, Yang Linfeng, Zhang Li, Guang Xuanmin, Niu Yuan, Jian Jianbo, Geng Qing-Chun, Liang Liping, Song Qijian, Jim M Dunwell, Wu Zhenzhen, Wen Jia, Liu Yu-Qin, Zhang Yuan-Ming*. 2016. Identification and validation of candidate genes associated with domesticated and improved traits in soybean. The Plant Genome 9, doi:10.3835/plantgenome2015. 09.0090
16. Wang Shi-Bo, Feng Jian-Ying, Ren Wen-Long, Huang Bo, Zhou Ling, Wen Yang-Jun, Zhang Jin, Jim M. Dunwell, Xu Shizhong*, Zhang Yuan-Ming*. 2016. Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology. Scientific Reports 6: 19444
17. Wen Jia, Zhao Xinwang, Wu Guorong, Xiang Dan, Liu Qing, Bu Su-Hong, Yi Can, Song Qijian, Jim M. Dunwell, Tu Jinxing, Zhang Tianzhen, Zhang Yuan-Ming*. Genetic dissection of heterosis using epistatic association mapping in a partial NCII mating design. Scientific Reports 2015, 5: 18376
18. Zhou Ling#, Wang Shi-Bo#, Jian Jianbo#, Geng Qing-Chun, Wen Jia, Song Qijian, Wu Zhenzhen, Li Guang-Jun, Liu Yu-Qin, Jim M. Dunwell, Zhang Jin, Feng Jian-Ying Feng, Niu Yuan, Zhang Li, Ren Wen-Long, Zhang Yuan-Ming*. 2015. Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method. Scientific Reports 5: 9350
19. Bu Su-Hong#, Zhao Xinwang#, Yi Can, Wen Jia, Tu Jinxing, Yuan-Ming Zhang*. Interacted QTL mapping in partial NCII design provides evidences for breeding by design. PLoS ONE 10(3): e0121034
20. Li Lanzhi, He Xiaohong, Zhang Hongyan, Wang Zhiming, Sun Congwei, Mou Tongmin, Li Xinqi, Zhang Yuanming, Hu Zhongli*. 20015. Genomewide mapping reveals a combination of different genetic effects causing the genetic basis of heterosis in two elite rice hybrids. Journal of Genetics 94(2): 261-270
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