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Hyperbranched rolling circle amplification (HRCA)-based fluorescence biosensor for ultrasensitive and specific detection of single-nucleotide polymorphism genotyping associated with the therapy of chronic hepatitis B virus infection
Talanta ( IF 5.6 ) Pub Date : 2018-08-28 , DOI: 10.1016/j.talanta.2018.08.064
Xiang-Hui Li , Xiao-Ling Zhang , Juan Wu , Ni Lin , Wei-Ming Sun , Min Chen , Qi-Shui Ou , Zhen-Yu Lin

Detection of specific genes related to drug action can provide scientific guidance for personalized medicine. Taking the detection of a single-nucleotide polymorphism (SNP) genotyping related to the chronic hepatitis B virus (HBV) therapy as an example, a novel biosensor with high sensitivity and selectivity was developed based on the hyperbranched rolling circle amplification (HRCA) in this work. The single-base mutant DNA (mutDNA) sequence can perfectly hybridize with the specially designed discrimination padlock probe and initiate the HRCA reaction. Subsequently, a great abundant of double-strand DNA sequences were released and a strong fluorescence signal can be detected after adding SYBR Green I. In particular, the enhanced fluorescence intensity exhibits a linear relationship with the logarithm of mutDNA concentration ranging from 0.1 nM to 40 nM with a low detection limit of 0.05 nM. However, when there was even a single base mismatch in the target DNA, the HRCA was suppressed and fluorescence response process could not occur, resulting in a high selectivity of this biosensor. Moreover, this detection strategy also performs well in human serums, demonstrating its potential application in detecting SNPs in real biological samples.



中文翻译:

基于超支化滚环扩增(HRCA)的荧光生物传感器,用于与慢性乙型肝炎病毒感染治疗相关的单核苷酸多态性基因型的超灵敏和特异性检测

与药物作用有关的特定基因的检测可以为个性化药物提供科学指导。以与慢性乙型肝炎病毒(HBV)治疗相关的单核苷酸多态性(SNP)基因型检测为例,在此基础上,基于超支化滚环扩增(HRCA),开发了一种具有高灵敏度和选择性的新型生物传感器。工作。单碱基突变DNA(mutDNA)序列可以与专门设计的鉴别挂锁探针完美杂交,并启动HRCA反应。随后,加入SYBR Green I后释放出大量双链DNA序列,并且可以检测到强荧光信号。特别是增强的荧光强度与mutDNA浓度从0的对数呈线性关系。1 nM至40 nM,检测下限为0.05 nM。但是,当目标DNA中甚至只有一个碱基错配时,HRCA受到抑制,并且荧光反应过程不会发生,从而导致该生物传感器的高选择性。此外,这种检测策略在人血清中也表现良好,证明了其在检测真实生物样品中SNP方面的潜在应用。

更新日期:2018-08-28
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