Next-generation sequencing has fueled significant advancement in plant breeding tools, such as genome-wide association studies (GWAS) and single-nucleotide polymorphism (SNP) analysis. In this dynamic landscape, plant databases housing SNP markers have evolved into hubs facilitating breeding initiatives and genomic research. PrunusMap, accessible at https://prunusmap.eead.csic.es is an open-source Web application tailored for the Prunus community. Featuring a user-friendly interface, PrunusMap empowers users to seamlessly align and locate markers across multiple genome versions of Prunus species and cultivars, supporting different queries and formats. Beyond locating marker positions, it provides a comprehensive list of annotated nearby genes and proteins. This streamlined process, driven by four intuitive features “Find markers”, “Align sequences”, “Align proteins” and “Locate by position”, significantly reduces workload and boosts efficiency, particularly for users with limited bioinformatics expertise. Moreover, PrunusMap's versatility is underscored by its commitment to incorporate additional Prunus genome sequences, annotations, and markers upon user request.

中文翻译：

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使用 PrunusMap 绘制 Prunus spp. 的基因组景观图


新一代测序推动了植物育种工具的重大进步，例如全基因组关联研究 （GWAS） 和单核苷酸多态性 （SNP） 分析。在这个充满活力的环境中，包含 SNP 标记的植物数据库已经发展成为促进育种计划和基因组研究的中心。PrunusMap （可通过 https://prunusmap.eead.csic.es 访问）是为 Prunus 社区量身定制的开源 Web 应用程序。PrunusMap 具有用户友好的界面，使用户能够无缝对齐和定位 Prunus 物种和栽培品种的多个基因组版本的标记，支持不同的查询和格式。除了定位标记位置外，它还提供了附近注释基因和蛋白质的完整列表。这个简化的过程由四个直观的功能“查找标记”、“对齐序列”、“对齐蛋白质”和“按位置定位”驱动，显著减少了工作量并提高了效率，特别是对于生物信息学专业知识有限的用户。此外，PrunusMap 的多功能性还体现在它致力于根据用户要求整合额外的 Prunus 基因组序列、注释和标记。