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Systems Genetics Analyses Reveals Key Genes Related to Behavioral Traits in the Striatum of CFW Mice
Journal of Neuroscience ( IF 4.4 ) Pub Date : 2024-06-26 , DOI: 10.1523/jneurosci.0252-24.2024
Zhe Han 1, 2 , Chunhua Yang 1, 2 , Hongjie He 1, 2 , Tingting Huang 1, 2 , Quanting Yin 1, 2 , Geng Tian 1, 2 , Yuyong Wu 1 , Wei Hu 1 , Lu Lu 3 , Akhilesh Kumar Bajpai 3 , Jia Mi 2, 4 , Fuyi Xu 2, 4
Affiliation  

The striatum plays a central role in directing many complex behaviors ranging from motor control to action choice and reward learning. In our study, we used 55 male CFW mice with rapid decay linkage disequilibrium to systematically mine the striatum-related behavioral functional genes by analyzing their striatal transcriptomes and 79 measured behavioral phenotypic data. By constructing a gene coexpression network, we clustered the genes into 13 modules, with most of them being positively correlated with motor traits. Based on functional annotations as well as Fisher's exact and hypergeometric distribution tests, brown and magenta modules were identified as core modules. They were significantly enriched for striatal-related functional genes. Subsequent Mendelian randomization analysis verified the causal relationship between the core modules and dyskinesia. Through the intramodular gene connectivity analysis, Adcy5 and Kcnma1 were identified as brown and magenta module hub genes, respectively. Knock outs of both Adcy5 and Kcnma1 lead to motor dysfunction in mice, and KCNMA1 acts as a risk gene for schizophrenia and smoking addiction in humans. We also evaluated the cellular composition of each module and identified oligodendrocytes in the striatum to have a positive role in motor regulation.



中文翻译:


系统遗传学分析揭示了 CFW 小鼠纹状体中与行为特征相关的关键基因



纹状体在指导从运动控制到动作选择和奖励学习的许多复杂行为中发挥着核心作用。在我们的研究中,我们使用55只具有快速衰减连锁不平衡的雄性CFW小鼠,通过分析其纹状体转录组和79个测量的行为表型数据,系统地挖掘纹状体相关的行为功能基因。通过构建基因共表达网络,我们将基因聚类成13个模块,其中大多数与运动特征正相关。基于功能注释以及费舍尔的精确和超几何分布测试,棕色和洋红色模块被确定为核心模块。它们的纹状体相关功能基因显着富集。随后的孟德尔随机化分析验证了核心模块与运动障碍之间的因果关系。通过模块内基因连接分析, Adcy5Kcnma1分别被鉴定为棕色和洋红色模块中心基因。 Adcy5Kcnma1的敲除会导致小鼠运动功能障碍,而KCNMA1是人类精神分裂症和吸烟成瘾的风险基因。我们还评估了每个模块的细胞组成,并确定纹状体中的少突胶质细胞在运动调节中具有积极作用。

更新日期:2024-06-27
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