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XIST dampens X chromosome activity in a SPEN-dependent manner during early human development
Nature Structural & Molecular Biology ( IF 12.5 ) Pub Date : 2024-06-04 , DOI: 10.1038/s41594-024-01325-3
Charbel Alfeghaly 1 , Gaël Castel 1 , Emmanuel Cazottes 1 , Madeleine Moscatelli 1 , Eva Moinard 2 , Miguel Casanova 1 , Juliette Boni 1 , Kasturi Mahadik 1 , Jenna Lammers 3 , Thomas Freour 3 , Louis Chauviere 1 , Carla Piqueras 1 , Ruben Boers 4 , Joachim Boers 4 , Joost Gribnau 4 , Laurent David 2, 5 , Jean-François Ouimette 1 , Claire Rougeulle 1
Affiliation  

XIST (X-inactive specific transcript) long noncoding RNA (lncRNA) is responsible for X chromosome inactivation (XCI) in placental mammals, yet it accumulates on both X chromosomes in human female preimplantation embryos without triggering X chromosome silencing. The XACT (X-active coating transcript) lncRNA coaccumulates with XIST on active X chromosomes and may antagonize XIST function. Here, we used human embryonic stem cells in a naive state of pluripotency to assess the function of XIST and XACT in shaping the X chromosome chromatin and transcriptional landscapes during preimplantation development. We show that XIST triggers the deposition of polycomb-mediated repressive histone modifications and dampens the transcription of most X-linked genes in a SPEN-dependent manner, while XACT deficiency does not significantly affect XIST activity or X-linked gene expression. Our study demonstrates that XIST is functional before XCI, confirms the existence of a transient process of X chromosome dosage compensation and reveals that XCI and dampening rely on the same set of factors.



中文翻译:


XIST 在人类早期发育过程中以 SPEN 依赖性方式抑制 X 染色体活性



XIST(X 失活特异性转录物)长链非编码 RNA (lncRNA) 负责胎盘哺乳动物的 X 染色体失活 (XCI),但它在人类女性植入前胚胎的两条 X 染色体上积累,而不会触发 X 染色体沉默。XACT(X 活性涂层转录物)lncRNA 与活性 X 染色体上的 XIST 共积累,并可能拮抗 XIST 功能。在这里,我们使用处于多能性幼稚状态的人类胚胎干细胞来评估 XIST 和 XACT 在植入前发育过程中塑造 X 染色体染色质和转录景观中的功能。我们表明 XIST 触发多梳介导的抑制组蛋白修饰的沉积,并以 SPEN 依赖性方式抑制大多数 X 连锁基因的转录,而 XACT 缺陷不会显着影响 XIST 活性或 X 连锁基因表达。我们的研究表明,XIST 在 XCI 之前起作用,证实了 X 染色体剂量补偿的瞬态过程的存在,并揭示了 XCI 和阻尼依赖于同一组因素。

更新日期:2024-06-04
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