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DNA T-shaped crossover tiles for 2D tessellation and nanoring reconfiguration
Nature Communications ( IF 14.7 ) Pub Date : 2023-11-23 , DOI: 10.1038/s41467-023-43558-8
Qi Yang 1 , Xu Chang 1 , Jung Yeon Lee 1 , Minu Saji 1 , Fei Zhang 1
Affiliation  

DNA tiles serve as the fundamental building blocks for DNA self-assembled nanostructures such as DNA arrays, origami, and designer crystals. Introducing additional binding arms to DNA crossover tiles holds the promise of unlocking diverse nano-assemblies and potential applications. Here, we present one-, two-, and three-layer T-shaped crossover tiles, by integrating T junction with antiparallel crossover tiles. These tiles carry over the orthogonal binding directions from T junction and retain the rigidity from antiparallel crossover tiles, enabling the assembly of various 2D tessellations. To demonstrate the versatility of the design rules, we create 2-state reconfigurable nanorings from both single-stranded tiles and single-unit assemblies. Moreover, four sets of 4-state reconfiguration systems are constructed, showing effective transformations between ladders and/or rings with pore sizes spanning ~20 nm to ~168 nm. These DNA tiles enrich the design tools in nucleic acid nanotechnology, offering exciting opportunities for the creation of artificial dynamic DNA nanopores.



中文翻译:

用于 2D 镶嵌和纳米环重新配置的 DNA T 形交叉瓷砖

DNA 瓦片是 DNA 自组装纳米结构(例如 DNA 阵列、折纸和设计晶体)的基本构建块。在 DNA 交叉瓷砖中引入额外的结合臂有望解锁不同的纳米组件和潜在应用。在这里,我们通过将 T 形连接与反平行交叉瓷砖相结合,展示了一层、两层和三层 T 形交叉瓷砖。这些瓦片继承了 T 形连接处的正交绑定方向,并保留了反平行交叉瓦片的刚性,从而能够组装各种 2D 镶嵌图案。为了证明设计规则的多功能性,我们从单链瓦片和单单元组件创建了二态可重构纳米环。此外,构建了四套 4 态重构系统,显示了孔径范围从约 20 nm 到约 168 nm 的梯子和/或环之间的有效转换。这些 DNA 瓦片丰富了核酸纳米技术的设计工具,为人工动态 DNA 纳米孔的创建提供了令人兴奋的机会。

更新日期:2023-11-24
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