The structure and properties of lignin can vary depending on the type of lignocellulosic biomass it comes from and the separation techniques used, and also affects its suitability for different applications. In this work, the structure and properties of lignin isolated from moso bamboo, wheat straw, and poplar wood by different treatment processes were compared. Results show that deep eutectic solvent (DES) extracted lignin exhibits well-preserved structures (including β-O-4, β–β, and β-5 linkages), a low molecular weight (M_n = 2300–3200 g/mol), and relatively homogeneous lignin fragments (1.93 < PDI < 2.33) compared to dealkaline lignin (DL) and milled wood lignin (MWL). Besides, lignin samples extracted by DES have a regular nanostructure, higher carbon residue content (>40 %), and excellent antioxidant properties (the free radical scavenging index >20). Among the three types of biomass, the structural destruction of lignin in straw is the most obvious, which is due to the degradation of β-O-4 and β-β linkages during DES treatment. These findings can contribute to a better understanding of the structural changes that occur in various treatment processes from different lignocellulosic biomass, and help maximize the targeted development of their applications based on the characteristics of lignin.