开链四吡咯普遍存在于生物体(藻类、动物、细菌和植物)中,包括胆红素、胆绿素、藻蓝胆素、藻红胆素和尿胆素等实例。开链四吡咯,统称为胆碱,来自四吡咯大环化合物的生物合成或降解。现在已知胆汁素可发挥多种生物学作用,包括光捕获(在藻胆蛋白中)、光形态发生、信号传导和氧化还原化学。bilins 的吸收光谱根据共轭程度跨越紫外 (UV)、可见光和近红外 (NIR) 区域,从而提供从红色/橙色到蓝色/绿色的各种颜色。bilins 的荧光强度通常很低,因此可用的光谱较少,但可以通过结构刚性化大幅增加,胆蛋白作为荧光标记的广泛使用证明了这一点。本文描述了 220 种化合物(270 种吸收和 13 种荧光光谱轨迹)的天然和合成来源的胆素的吸收和荧光光谱数据库。在过去约 50 年中发表的胆红素的光谱痕迹已被数字化并与有关溶剂、光化学性质(摩尔吸收系数和荧光量子产率)和文献参考的信息一起被收集起来。可以在以下位置查看、下载和访问光谱轨迹(xy 坐标数据文件)本文描述了 220 种化合物(270 种吸收和 13 种荧光光谱轨迹)的天然和合成来源的胆素的吸收和荧光光谱数据库。在过去约 50 年中发表的胆红素的光谱痕迹已被数字化并与有关溶剂、光化学性质(摩尔吸收系数和荧光量子产率)和文献参考的信息一起被收集起来。可以在以下位置查看、下载和访问光谱轨迹(xy 坐标数据文件)本文描述了 220 种化合物(270 种吸收和 13 种荧光光谱轨迹)的天然和合成来源的胆素的吸收和荧光光谱数据库。在过去约 50 年中发表的胆红素的光谱痕迹已被数字化并与有关溶剂、光化学性质(摩尔吸收系数和荧光量子产率)和文献参考的信息一起被收集起来。可以在以下位置查看、下载和访问光谱轨迹(xy 坐标数据文件)光化学性质(摩尔吸收系数和荧光量子产率)和参考文献。可以在以下位置查看、下载和访问光谱轨迹(xy 坐标数据文件)光化学性质(摩尔吸收系数和荧光量子产率)和参考文献。可以在以下位置查看、下载和访问光谱轨迹(xy 坐标数据文件)www.photochemcad.com。数字格式的光谱轨迹的可访问性应有助于不同科学领域感兴趣的识别和定量计算。
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Absorption and fluorescence spectra of open-chain tetrapyrrole pigments–bilirubins, biliverdins, phycobilins, and synthetic analogues
Open-chain tetrapyrroles are ubiquitous and abundant in living organisms (algae, animals, bacteria, and plants), including examples such as bilirubin, biliverdin, phycocyanobilin, phycoerythrobilin, and urobilin. The open-chain tetrapyrroles, collectively termed bilins, arise from biosynthesis or degradation of tetrapyrrole macrocycles. Bilins are now known to play a wide variety of biological roles encompassing light-harvesting (in phycobiliproteins), photomorphogenesis, signaling, and redox chemistry. The absorption spectra of bilins spans the ultraviolet (UV), visible, to near-infrared (NIR) regions depending on the degree of conjugation, thereby providing a wide range of colors from red/orange to blue/green. The fluorescence intensity of bilins is often quite low and hence fewer spectra are available, but can be increased substantially by structural rigidification, as evidenced by the wide use of biliproteins as fluorescent labels. The present article describes a database of absorption and fluorescence spectra of bilins from natural and synthetic origins for 220 compounds (270 absorption and 13 fluorescence spectral traces). Spectral traces of bilins published over the past ∼50 years have been digitized and assembled along with information concerning solvent, photochemical properties (molar absorption coefficient and fluorescence quantum yield), and literature references. The spectral traces (xy-coordinate data files) can be viewed, downloaded, and accessed at www.photochemcad.com. The accessibility of spectral traces in digital format should facilitate identification and quantitative calculations of interest in diverse scientific areas.