Arabian Journal of Chemistry ( IF 5.3 ) Pub Date : 2023-03-23 , DOI: 10.1016/j.arabjc.2023.104839 Noof A. Alenazi , Ahmad Fawzi Qarah , Mansoor Alsahag , Haifa Alharbi , Abrar Bayazeed , Salhah D. Al-Qahtani , Nashwa M. El-Metwaly
A series of substituted thieno[2,3-b:4,5-b′]dipyridine compounds were synthesized based on the reactions of 2-acetyl-3-aminothieno[2,3-b]pyridine derivative 1 with 1,3-bifunctional reagents (malononitrile, cyanoacetamide, acetylacetone, ethyl acetoacetate) and/or DMF-DMA. The frontier molecular orbitals of the produced derivatives were obtained from DFT/B3LYP calculations to investigate their structural and energetic properties. The data revealed that they had a low energy gap (ΔEH-L), 2.32–3.39 eV, where compounds 3 and 6 displayed the smallest and greatest values, respectively. Meanwhile, the antibacterial activity of synthesized thieno[2,3-b:4,5-b′]dipyridine analogues was tested against four bacterial strains. Derivatives 2, 3, 5 and 8 exhibited good activity against Gram-positive bacteria rather than Gram-negative comparable to the ampicillin drug reference. Also, thienodipyridine analogues 2, 3, 5 and 8 displayed good activity in general, but against Gram-positive rather than Gram-negative bacteria. Meanwhile, the SAR of the synthesized analogues was discussed to describe the effect of their substituents on both two Gram-positive bacteria (S. aureus and B. subtilis) and two Gram-negative bacteria (S. typhimurium and E. coli). Also, the molecular docking estimation was applied on these hybrids to inspect their binding interactions toward the E. coli DNA gyrase B active site (PDB code: 1AJ6).
中文翻译:
新型噻吩并[2,3-b:4,5-b']联吡啶抗菌剂的合成、分子建模和对接研究
基于2-乙酰基-3-氨基噻吩并[2,3 - b ]吡啶衍生物1与1,3-双功能试剂(丙二腈、氰基乙酰胺、乙酰丙酮、乙酰乙酸乙酯)和/或 DMF-DMA。从 DFT/B3LYP 计算中获得所产生衍生物的前沿分子轨道,以研究它们的结构和能量特性。数据显示它们的能隙 (ΔE H-L )较低,为 2.32–3.39 eV,其中化合物3和6分别显示最小值和最大值。同时,合成的噻吩并[2,3- b的抗菌活性:4,5- b ']联吡啶类似物针对四种细菌菌株进行了测试。与氨苄青霉素药物参考相比,衍生物 2、3、5和8对革兰氏阳性菌而非革兰氏阴性菌表现出良好的活性。此外,噻吩并二吡啶类似物2、3、5 和 8通常表现出良好的活性,但针对革兰氏阳性菌而不是革兰氏阴性菌。同时,讨论了合成类似物的 SAR 以描述其取代基对两种革兰氏阳性菌(金黄色葡萄球菌和枯草杆菌)的影响) 和两种革兰氏阴性菌(鼠伤寒沙门氏菌和大肠杆菌)。此外,分子对接估计应用于这些杂种,以检查它们对大肠杆菌DNA 促旋酶 B 活性位点(PDB 代码:1AJ6)的结合相互作用。