Coral reefs in the northern Red Sea experience strong seasonality. This affects reef carbon (C) cycling, but ecosystem-wide quantification of C fluxes in such reefs is limited. This study quantified seasonal reef community C fluxes with incubations. Resulting data were then incorporated into seasonal linear inverse models (LIM). For spring, additional sponge incubation results allowed for unique assessment of the contribution of sponges to C cycling. The coral reef ecosystem was heterotrophic throughout all seasons as gross community primary production (GPP; 136–200, range of seasonal means in mmol C m⁻² d⁻¹) was less than community respiration (R; 192–279), and balanced by import of organic carbon (52–100), 88‒92% of which being dissolved organic carbon (DOC). Hard coral GPP (74–110) and R (100–137), as well as pelagic bacteria DOC uptake (58–101) and R (42–86), were the largest C fluxes across seasons. The ecosystem was least heterotrophic in spring (highest irradiance) (GPP:R 0.81), but most heterotrophic in summer and fall with higher water temperatures (0.68 and 0.60, respectively). Adding the sponge community to the model increased community R (247 ± 8 without to 353 ± 13 with sponges (mean ± SD)). Sponges balanced this demand primarily with DOC uptake (105 ± 6, 97% by cryptic sponges). This rate is comparable to the uptake of DOC by pelagic bacteria (104 ± 5) placing the cryptic sponges among the dominant C cycling groups in the reef.