Chem Catalysis ( IF 11.5 ) Pub Date : 2022-12-14 , DOI: 10.1016/j.checat.2022.11.019 Xingyu Ouyang , Gongquan Liu , Shunjia Ji , Shenggan Luo , Ting Shi , Ping Xu , Yi-Lei Zhao , Hongzhi Tang
2,5-Dihydroxypridine dioxygenase (NicX) catalyzes an aromatic N-heterocylic ring opening. We renew reaction mechanisms of NicX and discover a competitive dioxetane pathway. Although the initial steps involve single-electron transfer from 2,5-hydroxypyridine (DHP) to dioxygen in both the lactone and dioxetane pathways, the ring-opening potential energy surface of the dioxetane pathway was calculated to be more favored. Energetic span (δE) of the lactone pathway was calculated to be 16.2 kcal/mol for the aromatic ring-opening step, higher by 9.4 kcal/mol than that of the dioxetane pathway. Moreover, the reactivity and pre-reaction state analyses suggest that DHP prefers a monoanionic form, or a neutral form upon proton shuttling of H105, rather than a dianionic form. Our results indicate that the 2-His-1-carboxylate-1-serine iron enzyme catalyzes the N-heterocylic aromatic ring opening via the preferential dioxetane pathway, affording a missing piece in the understanding of non-heme iron-enzyme chemistry.
中文翻译:
2,5-二羟基吡啶双加氧酶催化的双氧环裂解中的二氧杂环丁烷和内酯途径
2,5-二羟基吡啶双加氧酶 (NicX) 催化芳香N-杂环开环。我们更新了 NicX 的反应机制并发现了竞争性二氧杂环丁烷途径。尽管最初的步骤涉及在内酯和二氧杂环丁烷途径中从 2,5-羟基吡啶 (DHP) 到双氧的单电子转移,但经计算,二氧杂环丁烷途径的开环势能面更受青睐。经计算,芳族开环步骤的内酯途径的能量跨度 (δE) 为 16.2 kcal/mol,比二氧杂环丁烷途径高 9.4 kcal/mol。此外,反应性和反应前状态分析表明,DHP 在 H105 的质子穿梭时更喜欢单阴离子形式或中性形式,而不是双阴离子形式。我们的结果表明 2-His-1-carboxylate-1-serine 铁酶催化N-通过优先二氧杂环丁烷途径打开的杂环芳香环,为理解非血红素铁酶化学提供了一个缺失的部分。