As a novel thermophysical behavior, negative thermal expansion (NTE) has been studied in many materials. However, rare materials have realized giant NTE, and the methods to improve NTE are lacking. Herein, a giant NTE has been achieved in Zn_2-xCu_xP₂O₇ ceramics via microstructure effect. In the Zn_1.96Cu_0.04P₂O₇ ceramic body, the linear contraction measured by dilatometry reaches to 0.9% (3ΔL/L = 2.7%) when heated from −30 °C to 125 °C, while the intrinsic crystallographic volume contraction derived by X-ray diffraction is only 1.68%. The remarkable NTE enhancement in the ceramic sample is attributed to the microstructure effect. An apparent shrinkage of the voids has been observed by in-situ atomic force microscope (AFM). The voids with large size in the ceramic body is the key factor to enhance NTE. This is the first time to observe direct experimental evidence by AFM for microstructure effect. Microstructure effect is an effective method to produce giant NTE.