当前位置: X-MOL 学术J. Biomol. Struct. Dyn. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Spectroscopic profiling, DFT computations, molecular docking and molecular dynamic simulation of biologically active 5-isoquinolinesulfonic acid
Journal of Biomolecular Structure and Dynamics ( IF 2.7 ) Pub Date : 2021-12-09 , DOI: 10.1080/07391102.2021.2011417
A Saral 1, 2 , P Sudha 3 , S Muthu 4, 5 , Ahmad Irfan 6
Affiliation  

Abstract

The title compound 5-isoquinolinesulfonic acid (5IQSA) is characterized using the FT-IR, FT-Raman, NMR and UV-Vis spectra. The optimized molecular geometry, vibrational assignments, infrared intensities and Raman scattering are precisely calculated using Density Functional Theory (DFT) with the B3LYP/6-311++G(d,p) basis set. The 1H and 13C NMR chemical shifts are computed and compared with the experimental data. The TD-DFT/M062X/6-311++G(d,p) method is used to compute UV-Vis for different solvents, and the results are compared to UV-Vis spectra obtained experimentally. The HOMO-LUMO band gap energy is calculated for various solvents and compared to the band gap of UV-Vis spectra. Molecular dynamics simulations are used to investigate the biomolecular stability. Non-Linear Optical (NLO) behaviour has been illustrated using hyperpolarizability calculations. Topological studies such as Reduced Gradient Density (RDG), Electron Localization Function (ELF) and Localized Orbital Locator (LOL) are performed. The Molecular Electrostatic Potential (MEP), Natural Bond Orbital (NBO) analysis, Fukui functions and thermodynamic properties were analysed. To explore the biological behaviour of the examined compound, molecular docking was performed to evaluate the hydrogen bond distance and binding energies with (2XA4) kinase inhibitor protein.

Communicated by Ramaswamy H. Sarma



中文翻译:

具有生物活性的 5-异喹啉磺酸的光谱分析、DFT 计算、分子对接和分子动力学模拟

摘要

使用 FT-IR、FT-Raman、NMR 和 UV-Vis 光谱对标题化合物 5-异喹啉磺酸 (5IQSA) 进行了表征。使用密度泛函理论 (DFT) 和 B3LYP/6-311++G(d,p) 基组精确计算优化的分子几何结构、振动分配、红外强度和拉曼散射。1 H13计算 C NMR 化学位移并与实验数据进行比较。TD-DFT/M062X/6-311++G(d,p) 方法用于计算不同溶剂的 UV-Vis,并将结果与​​实验获得的 UV-Vis 光谱进行比较。计算各种溶剂的 HOMO-LUMO 带隙能量,并与 UV-Vis 光谱的带隙进行比较。分子动力学模拟用于研究生物分子的稳定性。已使用超极化率计算说明了非线性光学 (NLO) 行为。进行拓扑研究,例如降低梯度密度 (RDG)、电子局域化函数 (ELF) 和局部轨道定位器 (LOL)。分析了分子静电势 (MEP)、自然键轨道 (NBO) 分析、Fukui 函数和热力学性质。

由 Ramaswamy H. Sarma 传达

更新日期:2021-12-09
down
wechat
bug