European Journal of Medicinal Chemistry ( IF 6.0 ) Pub Date : 2021-12-01 , DOI: 10.1016/j.ejmech.2021.114030 Jian-Wei Zhang 1 , Yuan Xiong 2 , Feng Wang 1 , Fu-Mao Zhang 1 , Xiaodi Yang 1 , Guo-Qiang Lin 1 , Ping Tian 1 , Guangbo Ge 2 , Dingding Gao 1
The epidemic coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has now spread worldwide and efficacious therapeutics are urgently needed. 3-Chymotrypsin-like cysteine protease (3CLpro) is an indispensable protein in viral replication and represents an attractive drug target for fighting COVID-19. Herein, we report the discovery of 9,10-dihydrophenanthrene derivatives as non-peptidomimetic and non-covalent inhibitors of the SARS-CoV-2 3CLpro. The structure-activity relationships of 9,10-dihydrophenanthrenes as SARS-CoV-2 3CLpro inhibitors have carefully been investigated and discussed in this study. Among all tested 9,10-dihydrophenanthrene derivatives, C1 and C2 display the most potent SARS-CoV-2 3CLpro inhibition activity, with IC50 values of 1.55 ± 0.21 μM and 1.81 ± 0.17 μM, respectively. Further enzyme kinetics assays show that these two compounds dose-dependently inhibit SARS-CoV-2 3CLpro via a mixed-inhibition manner. Molecular docking simulations reveal the binding modes of C1 in the dimer interface and substrate-binding pocket of the target. In addition, C1 shows outstanding metabolic stability in the gastrointestinal tract, human plasma, and human liver microsome, suggesting that this agent has the potential to be developed as an orally administrated SARS-CoV-2 3CLpro inhibitor.
中文翻译:
发现 9,10-二氢菲衍生物作为 SARS-CoV-2 3CLpro 抑制剂用于治疗 COVID-19
由严重急性呼吸综合征冠状病毒 2 (SARS-CoV-2) 引起的流行性冠状病毒病 2019 (COVID-19) 目前已在全球范围内传播,迫切需要有效的治疗方法。 3-胰凝乳蛋白酶样半胱氨酸蛋白酶 (3CL pro ) 是病毒复制中不可或缺的蛋白质,是对抗 COVID-19 的一个有吸引力的药物靶点。在此,我们报告发现 9,10-二氢菲衍生物作为 SARS-CoV-2 3CL pro的非拟肽和非共价抑制剂。本研究对 9,10-二氢菲作为 SARS-CoV-2 3CL前体抑制剂的结构-活性关系进行了仔细研究和讨论。在所有测试的 9,10-二氢菲衍生物中, C1和C2显示出最有效的 SARS-CoV-2 3CL前体抑制活性,IC 50值分别为 1.55 ± 0.21 μM 和 1.81 ± 0.17 μM。进一步的酶动力学测定表明,这两种化合物通过混合抑制方式剂量依赖性地抑制 SARS-CoV-2 3CL pro 。分子对接模拟揭示了C1在二聚体界面和靶标底物结合口袋中的结合模式。此外, C1在胃肠道、人血浆和人肝微粒体中表现出出色的代谢稳定性,表明该药物具有开发为口服 SARS-CoV-2 3CL前体抑制剂的潜力。