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Entropy-driven population distributions in a prototypical molecule with two flexible side chains: O-(2-acetamidoethyl)-N-acetyltyramine.
The Journal of Chemical Physics ( IF 3.1 ) Pub Date : 2007 Dec 21 , DOI: 10.1063/1.2803076
V. Alvin Shubert 1 , Esteban E. Baquero 1 , Jasper R. Clarkson 1 , William H. James 1 , Jeffrey A. Turk 1 , Alissa A. Hare 1 , Kevin Worrel 1 , Mark A. Lipton 1 , Daniel P. Schofield 2 , Kenneth D. Jordan 2 , Timothy S. Zwier 1
Affiliation  

Resonant two-photon ionization (R2PI), resonant ion-dip infrared (RIDIR), and UV-UV hole-burning spectroscopies have been employed to obtain conformation-specific infrared and ultraviolet spectra under supersonic expansion conditions for O-(2-acetamidoethyl)-N-acetyltyramine (OANAT), a doubly substituted aromatic in which amide-containing alkyl and alkoxy side chains are located in para positions on a phenyl ring. For comparison, three single-chain analogs were also studied: (i) N-phenethyl-acetamide (NPEA), (ii) N-(p-methoxyphenethyl-acetamide) (NMPEA), and (iii) N-(2-phenoxyethyl)-acetamide (NPOEA). Six conformations of OANAT have been resolved, with S(0)-S(1) origins ranging from 34,536 to 35,711 cm(-1), denoted A-F, respectively. RIDIR spectra show that conformers A-C each possess an intense, broadened amide NH stretch fundamental shifted below 3400 cm(-1), indicative of the presence of an interchain H bond, while conformers D-F have both amide NH stretch fundamentals in the 3480-3495 cm(-1) region, consistent with independent-chain structures with two free NH groups. NPEA has a single conformer with S(0)-S(1) origin at 37,618 cm(-1). NMPEA has three conformers, two that dominate the R2P1 spectrum, with origin transitions between 35,580 and 35,632 cm(-1). Four conformations, one dominate and three minor, of NPOEA have been resolved with origins between 35,654 and 36,423 cm(-1). To aid the making of conformational assignments, the geometries of low-lying structures of all four molecules have been optimized and the associated harmonic vibrational frequencies calculated using density functional theory (DFT) and RIMP2 methods. The S(0)-S(1) adiabatic excitation energies have been calculated using the RICC2 method and vertical excitation energies using single-point time-dependent DFT. The sensitivity of the S(0)-S(1) energy separation in OANAT and NPOEA primarily arises from different orientations of the chain attached to the phenoxy group. Using the results of the single-chain analogs, tentative assignments have been made for the observed conformers of OANAT. The RIMP2 calculations predict that interchain H-bonded conformers of OANAT are 25-30 kJ/mol more stable than the extended-chain structures. However, the free energies of the interchain H-bonded and extended structures calculated at the preexpansion temperature (450 K) differ by less than 10 kJ/mol, and the number of extended structures far outweighs the number of H-bonded conformers. This entropy-driven effect explains the presence of the independent-chain conformers in the expansion, and cautions future studies that rely solely on relative energies of conformers in considering possible assignments.

中文翻译:

具有两个柔性侧链的原型分子中的熵驱动种群分布:O-(2-乙酰氨基乙基)-N-乙酰酪胺。

共振双光子电离(R2PI),共振离子浸入红外(RIDIR)和UV-UV空穴燃烧光谱法已被用于在超声膨胀条件下获得O-(2-乙酰氨基乙基)的特定构象的红外和紫外光谱-N-乙酰基酪胺(OANAT),一种双取代的芳族化合物,其中含酰胺的烷基和烷氧基侧链位于苯环的对位。为了比较,还研究了三种单链类似物:(i)N-苯乙基乙酰胺(NPEA),(ii)N-(对甲氧基苯乙基乙酰胺)(NMPEA)和(iii)N-(2-苯氧基乙基) )-乙酰胺(NPOEA)。解析了OANAT的六个构象,S(0)-S(1)的起源分别从34,536到35,711 cm(-1),分别表示为AF。RIDIR光谱表明,构象AC各自具有强烈的 加宽的酰胺NH拉伸基本面移动到3400 cm(-1)以下,表明存在链间H键,而构象异构体DF的两个酰胺NH拉伸基本面都在3480-3495 cm(-1)区域,与独立链一致具有两个游离NH基的结构。NPEA具有一个单一构象体,起源于37,618 cm(-1)的S(0)-S(1)。NMPEA具有三个构象异构体,其中两个在R2P1光谱中占主导地位,其原点跃迁在35,580和35,632 cm(-1)之间。NPOEA的四个构型,一个占优势,三个次要,已被解析,起源于35,654至36,423 cm(-1)之间。为了帮助进行构象分配,已对所有四个分子的低层结构的几何结构进行了优化,并使用密度泛函理论(DFT)和RIMP2方法计算了相关的谐波振动频率。已使用RICC2方法计算了S(0)-S(1)绝热激发能,并使用了单点时变DFT计算了垂直激发能。OANAT和NPOEA中S(0)-S(1)能量分离的敏感性主要来自与苯氧基相连的链的不同方向。利用单链类似物的结果,对观察到的OANAT构象异构体进行了初步分配。RIMP2计算预测,OANAT的链间氢键构象异构体比扩展链结构稳定25-30 kJ / mol。然而,在预膨胀温度(450 K)下计算出的链间氢键键合结构和扩展结构的自由能相差不到10 kJ / mol,并且扩展键结构的数量远远超过氢键键合构象体的数量。
更新日期:2017-01-31
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