准确性,敏感性,简便性,可重复性和低成本是遗传毒性评估技术的理想要求。在这里,我们基于对DNA样本进行快速退绕/复性处理和中性琼脂糖凝胶电泳,描述了一种简单的电泳分析,用于基因组DNA损伤定量(EAsy-GeL)。在这项工作中进行的实验涉及暴露于环境模拟剂量不断增加的紫外线B(UVB)辐射的不同生物样品,例如大肠杆菌,人类白细胞和分离的人类基因组DNA。使用通用且低成本的方案进行DNA提取,大约需要4小时。在电泳迁移之前,将DNA样品保存在中性缓冲液中以检测双链断裂(DSB),或进行5分钟的碱性退绕和中性复性以检测单链断裂(SSB)或与DNA修复一起孵育T4核酸内切酶V用于检测DNA展开/复性的5分钟步骤之前的环丁烷嘧啶二聚体(CPD)。然后,通过中性琼脂糖凝胶电泳分离所有DNA样品,使用免费软件计算每个泳道的DNA平均长度,并通过三个简单的规则确定每kbp DNA断裂的频率。剂量响应实验允许量化每个电泳运行中不同水平的DNA损伤,从恒定和少量的DSB / SSB到高和剂量依赖性的CPD。与其他基于碱性展开和凝胶电泳的分析相比,EAsy-GeL在环境监测和实验室测试方面均具有重要优势。该方案对其他类型的DNA损伤,生物学模型和活性剂的简便性和适用性使其成为遗传毒性,DNA修复研究以及评估生态系统和人类健康暴露风险的理想选择。EAsy-GeL在环境监测和实验室测试方面均具有重要优势。该方案对其他类型的DNA损伤,生物学模型和活性剂的简便性和适用性使其成为遗传毒性,DNA修复研究以及评估生态系统和人类健康暴露风险的理想选择。EAsy-GeL在环境监测和实验室测试方面均具有重要优势。该方案对其他类型的DNA损伤,生物学模型和活性剂的简便性和适用性使其成为遗传毒性,DNA修复研究以及评估生态系统和人类健康暴露风险的理想选择。
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Development of a rapid electrophoretic assay for genomic DNA damage quantification
Accuracy, sensitivity, simplicity, reproducibility, and low-cost are desirable requirements for genotoxicity assessment techniques. Here we describe a simple electrophoretic assay for genomic DNA lesions quantification (EAsy-GeL) based on subjecting DNA samples to rapid unwinding/renaturation treatments and neutral agarose gel electrophoresis. The experiments performed in this work involved different biological samples exposed to increasing environmental-simulated doses of ultraviolet-B (UVB) radiation, such as Escherichia coli, human leukocytes, and isolated human genomic DNA. DNA extraction was carried out using a universal and low-cost protocol, which takes about 4 h. Before electrophoresis migration, DNA samples were kept into a neutral buffer to detect double-strand breaks (DSBs) or subjected to a 5-min step of alkaline unwinding and neutral renaturation to detect single-strand breaks (SSBs) or incubated with the DNA repair enzyme T4-endonuclease V for the detection of cyclobutane pyrimidine dimers (CPDs) before the 5-min step of DNA unwinding/renaturation. Then, all DNA samples were separated by neutral agarose gel electrophoresis, the DNA average length of each lane was calculated through the use of free software, and the frequency of DNA breaks per kbp was determined by a simple rule of three. Dose-response experiments allowed the quantification of different levels of DNA damage per electrophoretic run, varying from a constant and low amount of DSBs/SSBs to high and dose-dependent levels of CPDs. Compared with other assays based on alkaline unwinding and gel electrophoresis, EAsy-GeL has important advantages for both environmental monitoring and laboratory testing purposes. The simplicity and applicability of this protocol to other types of DNA lesions, biological models, and agents make it ideal for genotoxicity, DNA repair studies, as well as for assessing exposure risks to ecosystems and human health.